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dotfiles/profiles/pymol/.pymolrc

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# general environment
bg_color white
#space cmyk
set fetch_path, /tmp
log_open /tmp/pymol_log.pml
set retain_order
# interface
set overlay, 1
# performance
set async_builds, on
set max_threads, 8
set cache_mode
set defer_builds_mode, 3
set hash_max, 500
# shortcuts
set_key F1, as lines, solvent
set_key F2, hide everything, solvent
set_key F3, as spheres, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F4, hide everything, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F5, as sticks, organic
set_key F6, hide everything, organic
set_key F9, set depth_cue
set_key F10, set depth_cue, off
set_key F11, ray 800,800
set_key F12, ray 1600,1600
# raytrace
set depth_cue, 0
set ray_opaque_background, false
set orthoscopic, 0
set ray_shadow, false
#set spec_reflect, 0
set antialias, 1
set surface_quality, 1
set ray_trace_mode, 0
set valence, 0
set cartoon_side_chain_helper, 1
set cartoon_discrete_colors, on
alias clean, hide everything, hydrogen