update

profiles/base/.condarc

@@ -1,7 +1,7 @@
-channel_priority: strict
-channels:
-  - spyder-ide
-  - conda-forge
-  - bioconda
-  - defaults
-  - salilab
+#channel_priority: strict
+#channels:
+#  - spyder-ide
+#  - conda-forge
+#  - bioconda
+#  - defaults
+#  - salilab

profiles/base/.config/matplotlib/matplotlibrc

@@ -340,8 +340,8 @@ axes.ymargin        : .00  # y margin See `axes.Axes.margins`
 
 ### TICKS
 # see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick
-#xtick.major.size     : 10      # major tick size in points
-#xtick.minor.size     : 10      # minor tick size in points
+#xtick.major.size     : 4      # major tick size in points
+#xtick.minor.size     : 3      # minor tick size in points
 xtick.major.pad      : 6      # distance to major tick label in points
 xtick.minor.pad      : 6      # distance to the minor tick label in points
 xtick.color          : 000000 #797979      # color of the tick labels
@@ -390,7 +390,7 @@ legend.fontsize      : 8 # 10
 #figure.titlesize : large      # size of the figure title (Figure.suptitle())
 #figure.titleweight : normal   # weight of the figure title
 figure.figsize   : 6.4,4.8   # figure size in inches
-figure.dpi       : 300      # figure dots per inch
+figure.dpi       : 600      # figure dots per inch
 #figure.facecolor : yellow #white   # figure facecolor; 0.75 is scalar gray
 # figure.edgecolor : white   # figure edgecolor
 figure.autolayout : True  # When True, automatically adjust subplot

profiles/laptop/.config/polybar/config

@@ -9,7 +9,7 @@ inherit = bar/base
 monitor = ${env:MONITOR:}
 
 modules-left = i3 xwindow 
-modules-right = previous playpause next spotify pulseaudio cpu memory battery1 date
+modules-right = previous playpause next spotify pulseaudio cpu memory battery1 date notifyd
 
 tray-position = right
 tray-padding = 2

profiles/pymol/.pymolrc

@@ -46,7 +46,8 @@ set cartoon_oval_length, 0.8
 set sphere_scale, 0.5
 
 # custom colors
-set_color sodium, [0.0, 0.5, 1.0]
+set_color sodium, [1.0, 0.87, 0.37]
+set_color potassium, [0.0, 0.5, 1.0]
 
 # bigger dashes
 set dash_gap, .35

profiles/shared/.config/i3/config

@@ -137,6 +137,12 @@ bindsym $mod+Shift+8 move container to workspace $workspace8
 bindsym $mod+Shift+9 move container to workspace $workspace9
 bindsym $mod+Shift+0 move container to workspace $workspace10
 
+# Make the currently focused window a scratchpad
+bindsym $mod+Shift+minus move scratchpad
+
+# Show the first scratchpad window
+bindsym $mod+minus scratchpad show
+
 # reload the configuration file
 bindsym $mod+Shift+c reload
 # restart i3 inplace (preserves your layout/session, can be used to upgrade i3)
@@ -199,7 +205,7 @@ assign [class="Mattermost" instance="mattermost"] → $workspace8
 assign [class="Rambox" instance="rambox"] → $workspace8
 
 workspace $workspace9 output eDP-1 
-assign [class="thunderbird"] → $workspace9
+assign [class="thunderbird" window_role="3pane"] → $workspace9
 
 workspace $workspace10 output eDP-1 
 assign [class="Spotify"] → $workspace10
@@ -209,7 +215,6 @@ for_window [class="Chromium" window_role="pop-up"] floating disable
 for_window [class="Tk"] floating enable
 for_window [title="PyMOL Viewer"] floating enable
 for_window [class="Toplevel"] floating enable
-for_window [title="VMD*"] floating enable
 for_window [title="Figure*" instance="matplotlib"] floating enable
 for_window [window_role="conversation" class="Pidgin"] floating enable
 

profiles/shared/.config/polybar/config.d/modules

@@ -85,10 +85,10 @@ ws-icon-2=3;3
 ws-icon-3=4;4
 ws-icon-4=5;5
 ws-icon-5=6;6
-ws-icon-6=7;
-ws-icon-7=8;
-ws-icon-8=9;
-ws-icon-9=10;
+ws-icon-6=7;7 
+ws-icon-7=8;8 
+ws-icon-8=9;9 
+ws-icon-9=10;0 
 
 [module/mpd]
 type=internal/mpd
@@ -399,3 +399,18 @@ exec=echo ""
 exec-if="pgrep spotify"
 line-size=1
 click-left="dbus-send --print-reply --dest=org.mpris.MediaPlayer2.spotify /org/mpris/MediaPlayer2 org.mpris.MediaPlayer2.Player.Next"
+
+[module/unread_mail]
+type = custom/script
+exec = "/home/bauer/conda/bin/python3 /home/bauer/.config/polybar/UnseenMail/UnseenMail.py"
+interval = 100
+format = <label>
+click-left = thunderbird &;
+
+[module/notifyd]
+type = custom/ipc
+initial = 1
+format-foreground = ${colors.yellow}
+
+hook-0 = echo "%{xfconf-query -c xfce4-notifyd -p /do-not-disturb -s true}%{A}" &
+hook-1 = echo "%{xfconf-query -c xfce4-notifyd -p /do-not-disturb -s false}%{A}" &

profiles/shared/.config/sublime-text-3/Packages/User/Package Control.sublime-settings

@@ -13,19 +13,21 @@
 		"CWL Syntax Highlighting",
 		"Fortran",
 		"gruvbox",
-		"Helium",
 		"Incomprehensible Ex",
 		"INI",
 		"LaTeX Snippets",
 		"LaTeXTools",
+		"LaTeXYZ",
 		"LSP",
 		"MarkdownLivePreview",
 		"MarkdownPreview",
 		"NeoVintageous",
 		"Ninja",
+		"Non Text Files",
 		"Package Control",
 		"PackageResourceViewer",
 		"Pymol Language",
+		"RainbowBrackets",
 		"RemoteSubl",
 		"RestructuredText Improved",
 		"rsub",

profiles/shared/.config/sublime-text-3/Packages/User/Preferences.sublime-settings

@@ -12,7 +12,7 @@
 	"detect_indentation": false,
 	"dictionary": "Packages/Language - English/en_US.dic",
 	"font_face": "Hack for Powerline Regular",
-	"font_size": 12,
+	"font_size": 11,
 	"hot_exit": false,
 	"ignored_packages":
 	[
@@ -28,6 +28,15 @@
 	],
 	"line_numbers": true,
 	"neovintageous_build_version": 11100,
+	"open_externally_patterns":
+	[
+		"*.jpg",
+		"*.jpeg",
+		"*.png",
+		"*.gif",
+		"*.zip",
+		"*.pdf"
+	],
 	"remember_open_files": false,
 	"rulers":
 	[
@@ -41,6 +50,7 @@
 	"translate_tabs_to_spaces": true,
 	"viewer": "zathura",
 	"vintage_start_in_command_mode": true,
+	"vintageous_reset_mode_when_switching_tabs": false,
 	"vintageous_use_ctrl_keys": false,
 	"vintageous_use_super_keys": false,
 	"word_wrap": false,

profiles/shared/.config/terminator/config

@@ -8,7 +8,7 @@
   [[default]]
     allow_bold = False
     cursor_color = "#aaaaaa"
-    font = Hack 14
+    font = Hack 12
     show_titlebar = False
     scrollback_lines = 5000
     scrollback_infinite = True