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pymol

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Daniel Bauer
2019-03-24 11:42:05 +01:00
parent e348febee0
commit b460eb596d
1 changed files with 53 additions and 11 deletions
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profiles/pymol/.pymolrc
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@@ -1,21 +1,63 @@
# general environment
bg_color white
space cmyk
set fetch_path, /tmp
set async_builds, on
set max_threads, 16
set cache_mode
set opaque_background, 0
log_open /tmp/pymol_log.pml
set cartoon_side_chain_helper, 1
set cartoon_highlight_color, grey50
set retain_order
# interface
set overlay, 1
set internal_gui_control_size, 10
set display_scale_factor, 2
# performance
set async_builds, on
set max_threads, 8
set cache_mode
set defer_builds_mode, 3
set hash_max, 500
# shortcuts
set_key F1, as lines, solvent
set_key F2, hide everything, solvent
set_key F3, as spheres, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F4, hide everything, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F5, as sticks, organic
set_key F6, hide everything, organic
set_key F9, set orthoscopic
set_key F10, set orthoscopic, off
set_key F11, ray
set_key F9, set depth_cue
set_key F10, set depth_cue, off
set_key F11, ray 800,800
set_key F12, ray 1600,1600
#Extending colors with color-blindness friendly color palette
#References:
#http://jfly.iam.u-tokyo.ac.jp/html/color_cb/#pallet
#https://personal.sron.nl/~pault/colourschemes.pdf
set_color cb_blue, [51, 34, 136]
set_color cb_tan, [221, 204, 119]
set_color cb_lightblue, [136, 204, 238]
set_color cb_green, [17, 119, 51]
set_color cb_teal, [68, 170, 153]
set_color cb_gold, [153, 153, 51]
set_color cb_salmon, [204, 102, 119]
set_color cb_red, [136, 34, 85]
set_color cb_pink, [170, 68, 153]
# raytrace
set depth_cue, 0
set ray_opaque_background, false
set orthoscopic, 0
set ray_shadow, false
set spec_reflect, 0
set antialias, 0
set surface_quality, 1
set ray_trace_mode, 0
set valence, 0
set cartoon_side_chain_helper, 1
set cartoon_discrete_colors, on
alias clean, hide everything, hydrogen