reorganize dotfiles

profiles/base/.zshrc

@@ -0,0 +1,56 @@
+if [ -f `which powerline-daemon` ]; then
+    powerline-daemon -q
+    POWERLINE_BASH_CONTINUATION=1
+    POWERLINE_BASH_SELECT=1
+    . /usr/local/lib/python2.7/dist-packages/powerline/bindings/zsh/powerline.zsh
+fi
+
+# Change default zim location
+export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim
+
+# Start zim
+[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh 
+
+# gromacs needs to be before ZIM for autocompletion
+if [ -z "$GMXRC" ]; then
+    GMXRC="/opt/gromacs-2018/bin/GMXRC"
+fi
+source $GMXRC
+
+# preferences
+export LANG=en_US.UTF-8
+export EDITOR='vim'
+export SSH_KEY_PATH="~/.ssh/rsa_id"
+export TERMINAL="terminator"
+export BROWSER="firefox"
+export PAGER='most'
+export BAT_PAGER='less'
+
+# alter path
+export PATH="$HOME/.cargo/bin:$PATH"
+export PATH="$HOME/anaconda3/bin:${PATH}" # binaries
+export PATH="$HOME/bin:${PATH}" # binaries
+export PATH="$HOME/scripts:${PATH}" # scripts
+export PATH="$HOME/.local/bin:${PATH}" # python executeables
+
+# aliases
+if [ -f .cargo/bin/bat ]; then
+    alias cat='bat'
+fi	
+alias clip='xsel --clipboard'
+alias groclean='rm \#*'
+alias sm='snakemake'
+alias ls='ls -lh'
+alias workon='source activate' # enable anaconda environ
+
+# config specific to this machine (not copied from dotfiles)
+if [ -f $HOME/.zshrc_local ]; then
+    source $HOME/.zshrc_local
+fi
+
+# fasd autocompletion
+eval "$(fasd --init auto)"
+
+# marker
+[[ -s "$HOME/.local/share/marker/marker.sh" ]] && source "$HOME/.local/share/marker/marker.sh"
+