reorganize dotfiles

.ssh/config

@@ -1,25 +0,0 @@
-Host *
-    ForwardX11 yes
-    PermitLocalCommand yes
-    #LocalCommand tar c -C${HOME} --exclude="dotfiles/.git" --exclude=".zim/.git" dotfiles .zim | ssh -o PermitLocalCommand=no %n "tar mx -C${HOME}; bash ~/dotfiles/dotfiles_setup.sh  ; chsh -s /bin/zsh" 
-
-Host summonerapi
-	HostName 46.4.78.43
-
-Host biodata0
-	User bauer
-    HostName biodata0.compbiol.bio.tu-darmstadt.de
-
-Host bioclust
-	User bauer
-	HostName bioclust.bio.tu-darmstadt.de
-
-Host bioinfo4
-    HostName 10.0.0.4
-	User bauer
-    ProxyCommand ssh -q biodata0 nc -q0 %h 22
-
-Host lcluster?*
-  User yg38ymab
-  ForwardX11 yes
-  HostName %h.hrz.tu-darmstadt.de

dotfiles.sh

@@ -0,0 +1,57 @@
+#!/bin/bash
+
+
+PROFILE_BASE_DIR=$HOME/.dotfiles/profiles
+
+# Link files of a single profile
+link_profile() {
+    profile=$1
+    profile_dir=${PROFILE_BASE_DIR}/$profile
+    
+    
+    if [ ! -d $profile_dir ]; then
+    	echo "$profile does not exist"
+		exit 1
+	else
+		echo "Linking files from profile $profile"
+	fi
+
+	cd $profile_dir
+	# Find all files to link
+	for file in `find . -type f | cut -c 3- | grep -v "^$"`; do
+		dir=$(dirname "${file}")
+		src=`pwd`/$file
+		dst_dir=$HOME/$dir
+		dst=$HOME/$file
+		
+		# create folder if not exist
+		if [ ! -d "$dst_dir" ]; then
+			echo "Creating destination direcory $dst_dir"
+			mkdir -p $dst_dir
+		fi
+
+		# link file
+		echo "Linking $src to $dst"
+		if [ -f "${dst}" ] || [ -L "${dst}" ]; then
+			echo "$dst_file esists. Override? [y/N]"
+			read response
+			if [ "$response" == 'y' ] || [ "$response" == 'Y' ] \
+				|| [ "$response" == 'yes' ] || [ "$response" == 'Yes' ]; then
+				ln -sf $src $dst
+			else
+				echo "Skipping $file"
+			fi
+		else
+			ln -s $src $dst	
+		fi
+	done
+}
+
+# link profiles
+if [ "$1" == "link" ]; then
+	shift
+	while [ "$1" != "" ]; do
+		link_profile $1
+		shift
+	done
+fi 

dotfiles_setup.sh

@@ -1,15 +0,0 @@
-#!/bin/bash
-dir="${HOME}/dotfiles"
-conffolder="${HOME}/.config"
-
-dotfiles=(".vimrc" ".vim" ".vimrc" ".zshrc" ".zshrc_functions" ".zim" ".zimrc" ".gitconfig")
-for dotfile in "${dotfiles[@]}"; do
-	ln -sf $dir/$dotfile ${HOME}/${dotfile}
-done
-
-# fonts
-mkdir -p ~/.config/fontconfig
-ln -sf $dir/.config/fontconfig/fonts.conf $conffolder/fontconfig/fonts.conf
-
-# matplotlib
-ln -sf $dir/.config/matplotlib ~/.config/matplotlib

install.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+# Make ZSH the default shell environment
+if [ `cat /etc/passwd | grep $USER | awk -F ':' '{print $7}'` != "/bin/zsh" ]; then
+	echo "Changing shell to zsh"
+	chsh -s $(which zsh)
+fi
+
+# linking base stuff
+$HOME/.dotfiles/dotfiles.sh link base  

profiles/pymol/.pymol/.pymol

@@ -0,0 +1 @@
+/home/bauer/dotfiles/.pymol