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6 Commits
v0.11.0
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hermes/cur
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157
.github/workflows/hermes_github.yml
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157
.github/workflows/hermes_github.yml
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# SPDX-FileCopyrightText: 2023 German Aerospace Center (DLR), Forschungszentrum Jülich, Helmholtz-Zentrum Dresden-Rossendorf
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#
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# SPDX-License-Identifier: CC0-1.0
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###############################################################################################################
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# TEMPLATE! To use this template, do the following:
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#
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# 1. Copy this file into the .github/workflows/ directory in your repository and remove the 'TEMPLATE_' prefix.
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# 2. Go through the file and carefully adapt to your needs, as marked by an '# ADAPT' comment.
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###############################################################################################################
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name: Software Publication
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on:
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# ADAPT
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# See the events you can react to at https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows
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push:
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branches:
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- main
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# NOTE: Do not delete the trigger on closed pull requests, the HERMES workflow needs this.
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pull_request:
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types:
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- closed
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jobs:
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hermes-prepare:
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name: Prepare Metadata for Curation
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runs-on: ubuntu-latest
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# This condition becomes much easier when we only react to push events on the release branch.
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# We still need to exclude the merge commit push of the post processing PR
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# ADAPT
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# Depending on the event you react to in the 'on:' section above, you will need to adapt this
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# to react on the specific events.
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# NOTE: You will probably still need to keep the exclusion check for commit messages provided by the workflow ('hermes/'/'hermes/post').
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if: >
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github.event_name == 'push' && ! (
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startsWith(github.ref_name, 'hermes/') ||
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contains(github.event.head_commit.message, 'hermes/post')
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)
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permissions:
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contents: write # Allow creation of new branches
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pull-requests: write # Postprocessing should be able to create a pull request with changes
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steps:
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- uses: actions/checkout@v3
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- uses: actions/setup-python@v4
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with:
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python-version: '3.10'
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- run: pip install git+https://github.com/softwarepub/hermes.git
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- run: hermes harvest
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- run: hermes process
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- run: hermes curate
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- run: |
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# Cache current branch for PR close job
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git branch --show-current > .hermes/curate/target_branch
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# Shorten the SHA for the PR title
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SHORT_SHA=$(echo "$GITHUB_SHA" | cut -c -8)
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echo "SHORT_SHA=$SHORT_SHA" >> "$GITHUB_ENV"
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# Create a curation branch
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git branch -c "hermes/curate-$SHORT_SHA"
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git push origin "hermes/curate-$SHORT_SHA"
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# Explicitly add to-be-curated metadata (which is ignored via .gitignore!)
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git add -f .hermes/curate
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- uses: peter-evans/create-pull-request@v5
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with:
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base: hermes/curate-${{ env.SHORT_SHA }}
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branch: hermes/curate-result-${{ env.SHORT_SHA }}
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title: Metadata Curation for Commit ${{ env.SHORT_SHA }}
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body: |
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Please carefully review the attached metadata.
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If you are satisfied with the result, you may merge this PR, which will trigger publication.
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(Any temporary branches will be cleaned up.)
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delete-branch: true
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hermes-curate:
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name: Publish Software with Curated Metadata
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if: github.event.pull_request.merged == true && startsWith( github.base_ref , 'hermes/curate-')
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runs-on: ubuntu-latest
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permissions:
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contents: write # Allow creation of new branches
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pull-requests: write # Postprocessing should be able to create a pull request with changes
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steps:
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- uses: actions/checkout@v3
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- uses: actions/setup-python@v4
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with:
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python-version: '3.10'
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- run: pip install git+https://github.com/softwarepub/hermes.git
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# ADAPT
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# If you want to publish artifacts (e.g., a zipped snapshot of your repository),
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# you can prepare this here.
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- run: git archive --format zip HEAD example tests django_signposting > artifact.zip
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# Run the HERMES deposition and postprocessing steps.
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# ADAPT
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# 1. You need to have an authentication token for your target publication platform
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# as a GitHub secret in your repository (in this example, this is called ZENODO_SANDBOX).
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# 2. Adapt the files you want to deposit. In the example, showcase.zip and README.md are deposited alongside the metadata.
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# 3. Check if you want to run with '--initial', as this may potentially create a completely new record (collection),
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# rather than a new version of the same collection!
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- run: hermes deposit --initial -O invenio_rdm.auth_token ${{ secrets.ZENODO_SANDBOX }} --file artifact.zip --file README.md
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# ADAPT
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# Remove this command if you don't want to do any postprocessing
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- run: hermes postprocess
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# ADAPT
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# If you don't want to run postprocessing, remove this complete section (next '-run' and 'uses: peter-evans/...' bullets).
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#
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# Note 1: We change the base branch here for the PR. This flow runs so far within the "curated-metadata-*" branch,
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# but now we want to add the changes done by deposit and post processing to the branch that was initially
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# meant to be published using HERMES.
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# Note 2: The create-pull-request action will NOT inherit the commits we did in the previous job. It will only look at the
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# changes within this local workspace we did *now*.
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- run: echo "TARGET_BRANCH=$(cat .hermes/curate/target_branch)" >> "$GITHUB_ENV"
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- uses: peter-evans/create-pull-request@v5
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with:
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branch: hermes/post-${{ github.run_id }}
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base: ${{ env.TARGET_BRANCH }}
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title: Review hermes post-processing results
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body: |
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This is an automated pull request created by HERMES post-processing.
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Please carefully review the changes and finally merge them into your
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# Delete all the curation branches
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- run: |
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for BRANCH in $(git ls-remote origin 'refs/heads/hermes/curate-*' | cut -f2 | cut -d'/' -f'3-'); do
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git push origin --delete "$BRANCH"
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done
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# TODO: if: failure() --- delete the curation branches when the deposition failed
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hermes-cleanup:
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name: Cleanup aborted curation branches
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if: github.event.pull_request.merged == false && startsWith( github.base_ref , 'hermes/curate-')
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runs-on: ubuntu-latest
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permissions:
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contents: write # Allow creation of new branches
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pull-requests: write # Postprocessing should be able to create a pull request with changes
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steps:
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- uses: actions/checkout@v3
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# Delete all the curation branches
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- run: |
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for BRANCH in $(git ls-remote origin 'refs/heads/hermes/curate-*' | cut -f2 | cut -d'/' -f'3-'); do
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git push origin --delete "$BRANCH"
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done
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3
.gitignore
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3
.gitignore
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@@ -5,3 +5,6 @@ dist
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build
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__pycache__
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*.sqlite3
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# Ignoring all HERMES cache files
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.hermes/
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hermes.log
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31
.hermes/curate/hermes.json
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31
.hermes/curate/hermes.json
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@@ -0,0 +1,31 @@
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{
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"@context": [
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"https://doi.org/10.5063/schema/codemeta-2.0",
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{
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"hermes": "https://software-metadata.pub/ns/hermes/"
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}
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],
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"@type": "SoftwareSourceCode",
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"author": [
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{
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"@id": "https://orcid.org/0000-0001-9447-460X",
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"@type": "Person",
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"affiliation": {
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"@type": "Organization",
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"legalName": "Senckenberg Society for Nature Research"
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},
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"familyName": "Bauer",
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"givenName": "Daniel",
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"email": "daniel.bauer@senckenberg.de"
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}
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],
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"description": "django_signposting is a Django middleware library that facilitates the addition of FAIR signposting headers to HTTP responses. This middleware helps in making your data more FAIR (Findable, accessible, interoperable, reuseable) by embedding signposting headers in responses, guiding clients to relevant resources linked to the response content.",
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"keywords": [
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"django",
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"FAIR",
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"signposting",
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"links"
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],
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"license": "https://spdx.org/licenses/MIT",
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"name": "FAIR signposting middleware for Django"
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}
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1
.hermes/curate/target_branch
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1
.hermes/curate/target_branch
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@@ -0,0 +1 @@
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main
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29
CITATION.cff
Normal file
29
CITATION.cff
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@@ -0,0 +1,29 @@
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# This CITATION.cff file was generated with cffinit.
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# Visit https://bit.ly/cffinit to generate yours today!
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cff-version: 1.2.0
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title: FAIR signposting middleware for Django
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message: >-
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If you use this software, please cite it using the
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metadata from this file.
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type: software
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authors:
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- given-names: Daniel
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family-names: Bauer
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email: daniel.bauer@senckenberg.de
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affiliation: Senckenberg Society for Nature Research
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orcid: 'https://orcid.org/0000-0001-9447-460X'
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abstract: >-
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django_signposting is a Django middleware library that
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facilitates the addition of FAIR signposting headers to
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HTTP responses. This middleware helps in making your data
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more FAIR (Findable, accessible, interoperable, reuseable)
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by embedding signposting headers in responses, guiding
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clients to relevant resources linked to the response
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content.
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keywords:
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- django
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- FAIR
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- signposting
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- links
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license: MIT
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@@ -164,3 +164,7 @@ on the detected signposting metadata and produces output similar to the one show
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## License
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Licensed under the MIT License.
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## References
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You can cite this library using this DOI: [10.5281/zenodo.15008517](https://doi.org/10.5281/zenodo.15008517).
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@@ -2,7 +2,7 @@ asgiref==3.8.1
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beautifulsoup4==4.12.3
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certifi==2024.8.30
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charset-normalizer==3.4.0
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django==5.1.3
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django==5.1.7
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django-json-ld==0.0.5
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django-signposting==0.10.0
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httplink==0.2.0
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9
hermes.toml
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9
hermes.toml
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[harvest]
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sources = [ "cff",]
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[deposit]
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target = "invenio_rdm"
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[deposit.invenio_rdm]
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site_url = "https://zenodo.org/"
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access_right = "open"
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Reference in New Issue
Block a user