mirror of
https://github.com/dnlbauer/dissertation-template.git
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69 lines
3.0 KiB
TeX
69 lines
3.0 KiB
TeX
%!TEX root = thesis.tex
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\makeglossaries
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\newacronym{MD}{MD}{molecular dynamics}
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\newacronym{LJ}{LJ}{Lennard-Jones}
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\newacronym{PME}{PME}{particle-mesh Ewald}
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\newacronym{HCN}{HCN}{hyperpolarization-activated cyclic nucleotide-gated}
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\newacronym{VSD}{VSD}{voltage sensor domain}
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\newacronym{LBD}{LBD}{ligand-binding domain}
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\newacronym{PD}{PD}{pore domain}
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\newacronym{SF}{SF}{selectivity filter}
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\newacronym{TPCs}{TPCs}{two-pore channels}
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\newacronym{KTN}{KTN}{nucleotide-binding domain}
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\newacronym{Na}{Na\textsuperscript{+}}{sodium}
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\newacronym{K}{K\textsuperscript{+}}{potassium}
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\newacronym{Cl}{Cl\textsuperscript{-}}{chloride}
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\newacronym{Ca}{Ca\textsuperscript{2+}}{calcium}
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\newacronym[firstplural=voltage-gated ion channels (VGICs)]{VGIC}{VGIC}{voltage-gated ion channel}
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\newacronym{If}{I\textsubscript{f}}{funny current}
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\newacronym[firstplural=transmembrane helices (TMHs)]{TMH}{TMH}{transmembrane helix}
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\newacronym{Kv}{K\textsubscript{V}}{voltage-gated potassium channel}
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\newacronym{Kchannel}{K\textsuperscript{+}~channel}{potassium channel}
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\newacronym{SAN}{SAN}{sinoatrial node}
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\newacronym{CNBD}{CNBD}{cyclic-nucleotide binding-domain}
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\newacronym{cAMP}{cAMP}{cyclic-adenosine monophosphate}
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\newacronym{cGMP}{cGMP}{cyclic-guanosine monophosphate}
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\newacronym{TRIP8b}{TRIP8b}{tetratricopeptide repeat-containing Rab8b-interacting protein}
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\newacronym{HCND}{HCND}{HCN domain}
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\newacronym{AA}{AA}{amino acid}
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\newacronym{PBC}{PBC}{periodic boundary conditions}
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\newacronym{PMF}{PMF}{potential of mean force}
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\newacronym{CV}{CV}{collective variable}
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\newacronym{MFEP}{MFEP}{minimal free energy pathway}
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\newacronym{FES}{FES}{free energy surface}
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\newacronym{US}{US}{umbrella sampling}
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\newacronym{WHAM}{WHAM}{Weighted Histogram Analysis Method}
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\newacronym{TEA}{TEA\textsuperscript{+}}{tetraethylazanium}
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\newacronym{POPC}{POPC}{palmitoyloleoylphosphatidylcholine}
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\newacronym{VdW}{VdW}{Van der Waals}
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\newacronym{RDF}{RDF}{radial distribution function}
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\newacronym{COM}{COM}{center-of-mass}
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\newacronym{CF}{CF}{cystic fibrosis}
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\newacronym{CFTR}{CFTR}{cystic fibrosis transmembrane conductance regulator}
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\newacronym{NEB}{NEB}{nudged elastic band}
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\newacronym{TST}{TST}{transition state theory}
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\newacronym{wt}{wt}{wildtype}
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\newcommand{\K}{\gls{K}\xspace}
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\newcommand{\Na}{\gls{Na}\xspace}
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\newcommand{\Cl}{\gls{Cl}\xspace}
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\newcommand{\Ca}{\gls{Ca}\xspace}
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\newcommand{\Calpha}{C\subs{$\alpha$}\xspace}
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\newcommand{\s}[1]{s\textsubscript{#1}\xspace}
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\newcommand{\p}[1]{p\textsubscript{#1}\xspace}
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\newcommand{\z}[1]{z\textsubscript{#1}\xspace}
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\newcommand{\Kchannel}{\K~channel\xspace}
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\newcommand{\Kchannels}{\K~channels\xspace}
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\newcommand{\KK}{\gls{K}/\gls{K}\xspace}
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\newcommand{\NaNa}{\gls{Na}/\gls{Na}\xspace}
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\newcommand{\KNa}{\gls{K}/\gls{Na}\xspace}
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\newcommand{\NaK}{\gls{Na}/\gls{K}\xspace}
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\newcommand{\KKK}{\gls{K}/\gls{K}/\gls{K}\xspace}
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\newcommand{\NaNaNa}{\gls{Na}/\gls{Na}/\gls{Na}\xspace}
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\newcommand{\KNaNa}{\gls{K}/\gls{Na}/\gls{Na}\xspace}
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\newcommand{\NaKK}{\gls{Na}/\gls{K}/\gls{K}\xspace}
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\glsaddall
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