Commit Graph

44 Commits

Author SHA1 Message Date
daniel
961fa95f61 do not overwrite tmp pmfs 2020-07-06 11:47:18 +02:00
daniel
4f38e2a780 reproduceable tmp pmfs 2020-07-06 11:33:28 +02:00
Daniel Bauer
4b2a12f742 Merge branch 'master' of https://github.com/danijoo/adaptiveumbrella 2019-08-27 13:50:47 +02:00
Daniel Bauer
37d261638f allow 1 or 0 for mask 2019-08-27 13:47:08 +02:00
Daniel Bauer
37e900dd91 wham now uses automask 2019-08-16 14:23:47 +02:00
Daniel Bauer
3f5100b779 function to exclude frames 2019-08-16 14:10:00 +02:00
Daniel Bauer
074d399984 wham2d can now hide some output when verbose is set to False 2019-07-31 13:10:14 +02:00
Daniel Bauer
f25288e4f5 Update __init__.py 2019-07-16 13:00:15 +02:00
Daniel Bauer
e226289cdd Update wham2d.py 2019-07-16 12:59:49 +02:00
Daniel Bauer
a076a8de87 set temperature for wham 2019-07-16 12:57:18 +02:00
Daniel Bauer
c4ca1b4cc4 version 2018-06-27 11:20:32 +02:00
Daniel Bauer
7b3ca36061 fix wham2d restart using data out of wham-2d bonds 2018-06-27 11:18:17 +02:00
Daniel Bauer
093581656a fix borders 2018-06-25 14:55:39 +02:00
Daniel Bauer
2a71da1059 wham2d now uses minimal dimensios for wham exec 2018-06-21 11:52:50 +02:00
Daniel Bauer
2805169885 error code fix 2018-06-20 22:50:28 +02:00
Daniel Bauer
4ed88297d4 wham exit code 2018-06-20 17:23:55 +02:00
Daniel Bauer
f330798c84 generalized wham2d impl 2018-06-20 14:57:47 +02:00
danijoo
3e05262c22 remove non-ascii char from description 2018-06-20 10:59:16 +02:00
danijoo
1da7f7a5f8 Update README.md 2018-06-20 10:58:47 +02:00
Daniel Bauer
1086ab2ec7 readme fix 2018-06-18 09:45:31 +02:00
Daniel Bauer
17ff1230c7 Merge branch 'master' of https://github.com/danijoo/adaptiveumbrella 2018-06-18 09:41:28 +02:00
Daniel Bauer
9a6f6f28c5 version up 2018-06-18 09:40:30 +02:00
Daniel Bauer
e52f8738d1 flag to reset energy after each cycle 2018-06-18 09:39:58 +02:00
danijoo
2fb3c605ea Update README.md 2018-06-17 22:42:43 +02:00
danijoo
0c24b8b91f Update README.md 2018-06-17 22:42:12 +02:00
Daniel Bauer
240d2b0028 Merge branch 'master' of https://github.com/danijoo/adaptiveumbrella 2018-06-17 22:40:31 +02:00
Daniel Bauer
510cc6f04b example 2018-06-17 22:39:35 +02:00
danijoo
e796aadc92 Update README.md 2018-06-17 14:05:52 +02:00
danijoo
d7030d1441 Create .travis.yml 2018-06-17 14:01:44 +02:00
Daniel Bauer
f905853d29 requirements.txt 2018-06-17 14:01:18 +02:00
Daniel Bauer
3187ee7345 some bugfixes 2018-06-17 13:56:50 +02:00
Daniel Bauer
025f397bc1 only sample neighboring windows 2018-06-17 11:54:25 +02:00
Daniel Bauer
0c2cd3fc0a Merge branch 'master' of https://github.com/danijoo/adaptiveumbrella 2018-06-17 10:55:45 +02:00
Daniel Bauer
0cce09b213 update gromacs/wham2d example for dialanine 2018-06-17 10:55:28 +02:00
danijoo
f92099dde7 Update README.md 2018-06-17 10:26:39 +02:00
Daniel Bauer
e298515a63 remove unicode char 2018-06-17 10:24:01 +02:00
danijoo
f7255959cf Update README.md 2018-06-17 10:22:35 +02:00
Daniel Bauer
a4125a8771 remove idea folder 2018-06-17 10:10:06 +02:00
Daniel Bauer
778e2d08df refractoring 2018-06-17 10:08:55 +02:00
Daniel Bauer
65fc1f6c35 first running version 2018-06-17 09:33:16 +02:00
Daniel Bauer
4ed7ea9410 asd 2018-06-16 15:29:44 +02:00
Daniel Bauer
8eb49bad8f WHAM2DRunner implementation 2018-06-16 15:13:50 +02:00
Daniel Bauer
591193b5c4 some refractoring and unit testing, now also works with more then 2 cvs 2018-06-16 13:22:56 +02:00
Daniel Bauer
ddd874cd57 initial commit 2018-06-16 10:46:38 +02:00