mirror of
https://github.com/dnlbauer/dotfiles.git
synced 2026-09-10 21:45:30 +00:00
109 lines
2.3 KiB
Bash
109 lines
2.3 KiB
Bash
# Source zim
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if [[ -s ${ZDOTDIR:-${HOME}}/.zim/init.zsh ]]; then
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source ${ZDOTDIR:-${HOME}}/.zim/init.zsh
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fi
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export PATH=$PATH:/
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# user bin
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export PATH="$HOME/bin:${PATH}"
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# scripts
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export PATH="$HOME/scripts:${PATH}"
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# python binaries
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export PATH="$HOME/.local/bin:${PATH}"
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# enable fasd autocompletion
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eval "$(fasd --init auto)"
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################# alias ###############################
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# open a web browser on google for a query
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function google {
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function urlencode {
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print "${${(j: :)@}//(#b)(?)/%$[[##16]##${match[1]}]}"
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}
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xdg-open "https://www.google.com/search?q=`urlencode "${(j: :)@}"`"
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}
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# separator
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function hr {
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print ${(l:COLUMNS::=:)}
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}
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alias groclean='rm \#*'
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setKeyboard() {
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setxkbmap -layout $1
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}
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eval $(thefuck --alias)
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# You can use whatever you want as an alias, like for Mondays:
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eval $(thefuck --alias fu)
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# Gromacs stuff
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# ==================================================
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swapgmx() {
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if [ "$GMXBIN" = "/opt/gromacs-cuda/bin" ];
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then
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gmxsbm;
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else
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gmxcuda;
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fi
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}
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gmxsbm() {
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echo "Sourcing GROMACS SBM"
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source /opt/gromacs-sbm/bin/GMXRC
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}
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gmxcuda() {
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echo "Sourcing GROMACS cuda"
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source /opt/gromacs-cuda/bin/GMXRC
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}
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if [ -z "$GMXRC" ]; then
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GMXRC="/opt/gromacs-cuda/bin/GMXRC"
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fi
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source $GMXRC
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# =============================================
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# ======= utility functions
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# supply id as
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pdb() {
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URL=http://www.rcsb.org/pdb/files/$1.pdb.gz
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if [ -z "$2" ]; then
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2="./"
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fi
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wget $URL -P $2
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gunzip $2/$1.pdb.gz
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}
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# =========================
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# perl
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PATH="/home/bauer/perl5/bin${PATH:+:${PATH}}"; export PATH;
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PERL5LIB="/home/bauer/perl5/lib/perl5${PERL5LIB:+:${PERL5LIB}}"; export PERL5LIB;
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PERL_LOCAL_LIB_ROOT="/home/bauer/perl5${PERL_LOCAL_LIB_ROOT:+:${PERL_LOCAL_LIB_ROOT}}"; export PERL_LOCAL_LIB_ROOT;
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PERL_MB_OPT="--install_base \"/home/bauer/perl5\""; export PERL_MB_OPT;
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PERL_MM_OPT="INSTALL_BASE=/home/bauer/perl5"; export PERL_MM_OPT;
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# copernicus
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export CPC_HOME=/opt/copernicus
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export PATH=$PATH:$CPC_HOME
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# cuda
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export CUDA_HOME=/opt/cuda;
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#PYTHONPATH="$HOME/scripts"
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#modeller
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PYTHONPATH="$PYTHONPATH:/opt/modeller/modlib:/opt/modeller/lib/x86_64-intel8/python3.3"
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export PYTHONPATH
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export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/modeller/lib/x86_64-intel8"
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export BROWSER=firefox
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