# aliases
if [ -f .cargo/bin/bat ]; then
    alias cat='bat'
fi	
alias clip='xsel --clipboard'
alias groclean='rm \#*'
alias latexclean='for i in `*aux *bbl *blg *fdb_latexmk *fls *lof *log *lot *out *synctex.gz *toc`; do rm $i; done'
alias ls='ls --color=auto -lh'
alias workon='source activate' # enable anaconda environ
alias cwl="cwl-runner"

function gitignore() {
    for i in "$@"; do
        echo $i >> .gitignore
    done
}

# lhr
alias squeue="ssh lcluster11 squeue"
alias csum="ssh lcluster11 csum"
alias csreport="ssh lcluster11 csreport"
alias scancel="ssh lcluster11 scancel"

# snakemake use all cores by default
sm() {
    if [[ "$*" == *"-j"* || "$*" == *"--jobs"* || "$*" == *"--cores"* ]]; then
        snakemake $@
    else
        snakemake -j all $@
    fi 
}

# extract whatever archive
alias extract="dtrx"

# faster sshfs
#alias sshfs="sshfs -o Ciphers=arcfour,Compression=no,auto_cache"
#alias sshfs="sshfs -o Compression=no,auto_cache"