diff --git a/profiles/base/.local/share/marker/user_commands.txt b/profiles/base/.local/share/marker/user_commands.txt
index aabb977..43d7e41 100644
--- a/profiles/base/.local/share/marker/user_commands.txt
+++ b/profiles/base/.local/share/marker/user_commands.txt
@@ -1 +1,2 @@
-cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs-2019.1/ -DCMAKE_C_COMPILER=/usr/bin/gcc-4.9 -DCMAKE_CXX_COMPILER=/usr/bin/g++-4.9##gmx_compile
\ No newline at end of file
+cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs-2019.1/ -DCMAKE_C_COMPILER=/usr/bin/gcc-4.9 -DCMAKE_CXX_COMPILER=/usr/bin/g++-4.9##gmx_compile
+git clone git@git.compbiol.bio.tu-darmstadt.de:Daniel/md-template.git sim##md-template
\ No newline at end of file
diff --git a/profiles/i3/.config/i3/autoxrandr b/profiles/desktop/.config/i3/autoxrandr
similarity index 100%
rename from profiles/i3/.config/i3/autoxrandr
rename to profiles/desktop/.config/i3/autoxrandr
diff --git a/profiles/i3/.config/i3/config b/profiles/desktop/.config/i3/config
similarity index 100%
rename from profiles/i3/.config/i3/config
rename to profiles/desktop/.config/i3/config
diff --git a/profiles/i3/.config/i3/scripts/change_monitor.sh b/profiles/desktop/.config/i3/scripts/change_monitor.sh
similarity index 100%
rename from profiles/i3/.config/i3/scripts/change_monitor.sh
rename to profiles/desktop/.config/i3/scripts/change_monitor.sh
diff --git a/profiles/i3/.config/i3/scripts/cpu_usage b/profiles/desktop/.config/i3/scripts/cpu_usage
similarity index 100%
rename from profiles/i3/.config/i3/scripts/cpu_usage
rename to profiles/desktop/.config/i3/scripts/cpu_usage
diff --git a/profiles/i3/.config/i3/scripts/current_track b/profiles/desktop/.config/i3/scripts/current_track
similarity index 100%
rename from profiles/i3/.config/i3/scripts/current_track
rename to profiles/desktop/.config/i3/scripts/current_track
diff --git a/profiles/i3/.config/i3/scripts/disk b/profiles/desktop/.config/i3/scripts/disk
similarity index 100%
rename from profiles/i3/.config/i3/scripts/disk
rename to profiles/desktop/.config/i3/scripts/disk
diff --git a/profiles/i3/.config/i3/scripts/exit_menu b/profiles/desktop/.config/i3/scripts/exit_menu
similarity index 100%
rename from profiles/i3/.config/i3/scripts/exit_menu
rename to profiles/desktop/.config/i3/scripts/exit_menu
diff --git a/profiles/i3/.config/i3/scripts/gpu b/profiles/desktop/.config/i3/scripts/gpu
similarity index 100%
rename from profiles/i3/.config/i3/scripts/gpu
rename to profiles/desktop/.config/i3/scripts/gpu
diff --git a/profiles/i3/.config/i3/scripts/keyboard_layout b/profiles/desktop/.config/i3/scripts/keyboard_layout
similarity index 100%
rename from profiles/i3/.config/i3/scripts/keyboard_layout
rename to profiles/desktop/.config/i3/scripts/keyboard_layout
diff --git a/profiles/i3/.config/i3/scripts/load_average b/profiles/desktop/.config/i3/scripts/load_average
similarity index 100%
rename from profiles/i3/.config/i3/scripts/load_average
rename to profiles/desktop/.config/i3/scripts/load_average
diff --git a/profiles/i3/.config/i3/scripts/memory b/profiles/desktop/.config/i3/scripts/memory
similarity index 100%
rename from profiles/i3/.config/i3/scripts/memory
rename to profiles/desktop/.config/i3/scripts/memory
diff --git a/profiles/i3/.config/i3/scripts/openvpn b/profiles/desktop/.config/i3/scripts/openvpn
similarity index 100%
rename from profiles/i3/.config/i3/scripts/openvpn
rename to profiles/desktop/.config/i3/scripts/openvpn
diff --git a/profiles/i3/.config/i3/scripts/shutdown_menu b/profiles/desktop/.config/i3/scripts/shutdown_menu
similarity index 100%
rename from profiles/i3/.config/i3/scripts/shutdown_menu
rename to profiles/desktop/.config/i3/scripts/shutdown_menu
diff --git a/profiles/i3/.config/i3/scripts/song.awk b/profiles/desktop/.config/i3/scripts/song.awk
similarity index 100%
rename from profiles/i3/.config/i3/scripts/song.awk
rename to profiles/desktop/.config/i3/scripts/song.awk
diff --git a/profiles/i3/.config/i3/scripts/spotify.py b/profiles/desktop/.config/i3/scripts/spotify.py
similarity index 100%
rename from profiles/i3/.config/i3/scripts/spotify.py
rename to profiles/desktop/.config/i3/scripts/spotify.py
diff --git a/profiles/i3/.config/i3/scripts/spotify_control b/profiles/desktop/.config/i3/scripts/spotify_control
similarity index 100%
rename from profiles/i3/.config/i3/scripts/spotify_control
rename to profiles/desktop/.config/i3/scripts/spotify_control
diff --git a/profiles/i3/.config/i3/scripts/spotify_control.bck b/profiles/desktop/.config/i3/scripts/spotify_control.bck
similarity index 100%
rename from profiles/i3/.config/i3/scripts/spotify_control.bck
rename to profiles/desktop/.config/i3/scripts/spotify_control.bck
diff --git a/profiles/i3/.config/i3/scripts/ssd b/profiles/desktop/.config/i3/scripts/ssd
similarity index 100%
rename from profiles/i3/.config/i3/scripts/ssd
rename to profiles/desktop/.config/i3/scripts/ssd
diff --git a/profiles/i3/.config/i3/scripts/tmux b/profiles/desktop/.config/i3/scripts/tmux
similarity index 100%
rename from profiles/i3/.config/i3/scripts/tmux
rename to profiles/desktop/.config/i3/scripts/tmux
diff --git a/profiles/i3/.config/i3/scripts/volume b/profiles/desktop/.config/i3/scripts/volume
similarity index 100%
rename from profiles/i3/.config/i3/scripts/volume
rename to profiles/desktop/.config/i3/scripts/volume
diff --git a/profiles/i3/.config/i3/scripts/volume-pulseaudio b/profiles/desktop/.config/i3/scripts/volume-pulseaudio
similarity index 100%
rename from profiles/i3/.config/i3/scripts/volume-pulseaudio
rename to profiles/desktop/.config/i3/scripts/volume-pulseaudio
diff --git a/profiles/i3/.config/i3/scripts/volume_1 b/profiles/desktop/.config/i3/scripts/volume_1
similarity index 100%
rename from profiles/i3/.config/i3/scripts/volume_1
rename to profiles/desktop/.config/i3/scripts/volume_1
diff --git a/profiles/i3/.config/i3/workspace-9.json b/profiles/desktop/.config/i3/workspace-9.json
similarity index 100%
rename from profiles/i3/.config/i3/workspace-9.json
rename to profiles/desktop/.config/i3/workspace-9.json
diff --git a/profiles/i3/.config/i3/xrandr.sh b/profiles/desktop/.config/i3/xrandr.sh
similarity index 100%
rename from profiles/i3/.config/i3/xrandr.sh
rename to profiles/desktop/.config/i3/xrandr.sh
diff --git a/profiles/i3/.config/polybar/config b/profiles/desktop/.config/polybar/config
similarity index 100%
rename from profiles/i3/.config/polybar/config
rename to profiles/desktop/.config/polybar/config
diff --git a/profiles/i3/.config/polybar/gpu.sh b/profiles/desktop/.config/polybar/gpu.sh
similarity index 100%
rename from profiles/i3/.config/polybar/gpu.sh
rename to profiles/desktop/.config/polybar/gpu.sh
diff --git a/profiles/i3/.config/polybar/polybar.sh b/profiles/desktop/.config/polybar/polybar.sh
similarity index 100%
rename from profiles/i3/.config/polybar/polybar.sh
rename to profiles/desktop/.config/polybar/polybar.sh
diff --git a/profiles/i3/.config/polybar/spotify.py b/profiles/desktop/.config/polybar/spotify.py
similarity index 100%
rename from profiles/i3/.config/polybar/spotify.py
rename to profiles/desktop/.config/polybar/spotify.py
diff --git a/profiles/desktop/.config/terminator/config b/profiles/desktop/.config/terminator/config
new file mode 100644
index 0000000..b37ad2d
--- /dev/null
+++ b/profiles/desktop/.config/terminator/config
@@ -0,0 +1,25 @@
+[global_config]
+  enabled_plugins = InactivityWatch, ActivityWatch, TerminalShot, LaunchpadCodeURLHandler, APTURLHandler, LaunchpadBugURLHandler
+  suppress_multiple_term_dialog = True
+[keybindings]
+[layouts]
+  [[default]]
+    [[[child1]]]
+      parent = window0
+      type = Terminal
+    [[[window0]]]
+      parent = ""
+      type = Window
+[plugins]
+[profiles]
+  [[default]]
+    allow_bold = False
+    copy_on_selection = True
+    cursor_color = "#aaaaaa"
+    font = Hack 14
+    palette = "#282828:#cc241d:#98971a:#d79921:#458588:#b16286:#689d6a:#a89984:#928374:#fb4934:#b8bb26:#fabd2f:#83a598:#d3869b:#8ec07c:#ebdbb2"
+    rewrap_on_resize = False
+    scrollback_infinite = True
+    scrollback_lines = 5000
+    show_titlebar = False
+    use_system_font = False
diff --git a/profiles/pymol/.pymolrc b/profiles/pymol/.pymolrc
index f555d39..c1e59c4 100644
--- a/profiles/pymol/.pymolrc
+++ b/profiles/pymol/.pymolrc
@@ -5,6 +5,7 @@ set fetch_path, /tmp
 log_open /tmp/pymol_log.pml
 set retain_order
 
+
 # interface
 set overlay, 1
 
@@ -38,9 +39,11 @@ set surface_quality, 1
 set ray_trace_mode, 0
 
 set valence, 0
+set cartoon_gap_cutoff, 0
 set cartoon_side_chain_helper, 1
 set cartoon_discrete_colors, on
 
-alias clean, hide everything, hydrogen
+alias clean, hide everything, hydrogen or n. 1M* or n. 2M*
+alias sf_as_sticks, show_as sticks, resid 479-483; clean