antidote + cleanup

This commit is contained in:
daniel
2023-03-18 12:00:27 +01:00
parent fd65585022
commit ea11291a56
13 changed files with 1745 additions and 1400 deletions

View File

@@ -1,38 +1,3 @@
# aliases
if [ -f .cargo/bin/bat ]; then
alias cat='bat'
fi
alias clip='xsel --clipboard'
alias groclean='rm \#*'
alias latexclean='for i in `*aux *bbl *blg *fdb_latexmk *fls *lof *log *lot *out *synctex.gz *toc`; do rm $i; done'
alias ls='ls --color=auto -lh'
alias workon='source activate' # enable anaconda environ
alias cwl="cwl-runner"
function gitignore() {
for i in "$@"; do
echo $i >> .gitignore
done
}
# lhr
alias squeue="ssh lcluster17 squeue"
alias csum="ssh lcluster17 csum"
alias csreport="ssh lcluster17 csreport"
alias scancel="ssh lcluster17 scancel"
# snakemake use all cores by default
sm() {
if [[ "$*" == *"-j"* || "$*" == *"--jobs"* || "$*" == *"--cores"* ]]; then
snakemake $@
else
snakemake -j all $@
fi
}
# extract whatever archive
alias extract="dtrx"
# faster sshfs
#alias sshfs="sshfs -o Ciphers=arcfour,Compression=no,auto_cache"
#alias sshfs="sshfs -o Compression=no,auto_cache"