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update

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Daniel Bauer
2019-06-05 15:39:00 +02:00
parent 24aaa5ae93
commit e8911c90ee
2 changed files with 37 additions and 23 deletions
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4
profiles/base/.config/matplotlib/stylelib/publication.mplstyle
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@@ -315,8 +315,8 @@ axes.labelcolor : black
axes.spines.left : True # display axis spines
# axes.spines.bottom : True
axes.spines.top : False
axes.spines.right : False
axes.spines.top : True
axes.spines.right : True
#axes.unicode_minus : True # use unicode for the minus symbol

56
profiles/pymol/.pymolrc
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@@ -16,34 +16,48 @@ set cache_mode
set defer_builds_mode, 3
set hash_max, 500
# raytrace
set depth_cue, 0
set ray_opaque_background, false
set orthoscopic, 0
#set ray_shadow, false
set spec_reflect, 0.25
set antialias, 1
set surface_quality, 1
set ray_trace_mode, 0
]
# hide nonbonded and nbsphreres
set nonbonded_transparency, 1
set nb_spheres_size, 0
# stick settings
set valence, 0
# cartoon
set cartoon_sampling, 30 # fancier
set cartoon_gap_cutoff, 1
set cartoon_side_chain_helper, 1
set cartoon_discrete_colors, on
set cartoon_highlight_color, gray
# shortcuts
set_key F1, as lines, solvent
set_key F2, hide everything, solvent
set_key F3, as spheres, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F4, hide everything, inorganic and (n. NA or n. K or n. CL or n. CA or n. XE or n. RN)
set_key F5, as sticks, organic
set_key F6, hide everything, organic
set_key F1, toggle sticks, solvent
set_key F2, toggle sticks, (r. POPC or r. POP) and not hydrogen
set_key F3, toggle spheres, inorganic and (n. NA or n. K)
set_key F4, toggle spheres, n. CL
set_key F9, set depth_cue
set_key F10, set depth_cue, off
set_key F11, ray 800,800
set_key F12, ray 1600,1600
# raytrace
set depth_cue, 0
set ray_opaque_background, false
set orthoscopic, 0
set ray_shadow, false
#set spec_reflect, 0
set antialias, 1
set surface_quality, 1
set ray_trace_mode, 0
set valence, 0
set cartoon_gap_cutoff, 0
set cartoon_side_chain_helper, 1
set cartoon_discrete_colors, on
alias clean, hide everything, hydrogen or n. 1M* or n. 2M* or n. MC*
alias sf_as_sticks, show_as sticks, resid 479-483; clean
alias sf_as_sticks, show sticks, residue 478-484 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*); hide cartoon, resi 479-483; show sticks, residue 475+468 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*)