From ad51cca03c64a42871a6ff0d8556e6b600e68667 Mon Sep 17 00:00:00 2001
From: Daniel Bauer <bauer@cbs.tu-darmstadt.de>
Date: Fri, 28 Sep 2018 13:11:04 +0200
Subject: [PATCH 1/2] matplotlibrc to newest version

---
 matplotlibrc | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/matplotlibrc b/matplotlibrc
index 1ed6cf7..71f091d 100644
--- a/matplotlibrc
+++ b/matplotlibrc
@@ -333,7 +333,7 @@ axes.prop_cycle    : cycler('color', ['348ABD', '7A68A6', 'A60628', '467821', 'C
                       # 467821 : green
 
 patch.facecolor: 0072B2
-axes.autolimit_mode : round_number # How to scale axes limits to the data.
+axes.autolimit_mode : data # How to scale axes limits to the data.
                             # Use "data" to use data limits, plus some margin
                             # Use "round_number" move to the nearest "round" number
 axes.xmargin        : .00  # x margin.  See `axes.Axes.margins`

From da5f29f675d18a574bad62d6167ba75261c55813 Mon Sep 17 00:00:00 2001
From: Daniel Bauer <bauer@cbs.tu-darmstadt.de>
Date: Fri, 28 Sep 2018 13:11:32 +0200
Subject: [PATCH 2/2] fix gmx autocompletion + removed zshrc_functions

---
 .zshrc           | 47 ++++++++++++++++++++++++-----------------------
 .zshrc_functions | 38 --------------------------------------
 2 files changed, 24 insertions(+), 61 deletions(-)
 delete mode 100644 .zshrc_functions

diff --git a/.zshrc b/.zshrc
index e6be33b..dc59bc1 100644
--- a/.zshrc
+++ b/.zshrc
@@ -1,20 +1,23 @@
-if [ -f /usr/local/lib/python2.7/dist-packages/powerline/bindings/zsh/powerline.zsh ]; 
-then
-       	source /usr/local/lib/python2.7/dist-packages/powerline/bindings/zsh/powerline.zsh 
+if [ -f `which powerline-daemon` ]; then
+    powerline-daemon -q
+    POWERLINE_BASH_CONTINUATION=1
+    POWERLINE_BASH_SELECT=1
+    . /usr/local/lib/python2.7/dist-packages/powerline/bindings/zsh/powerline.zsh
 fi
 
-
-#
-# User configuration sourced by interactive shells
-#
+# gromacs needs to be before ZIM for autocompletion
+if [ -z "$GMXRC" ]; then
+    GMXRC="/opt/gromacs-2018/bin/GMXRC"
+fi
+source $GMXRC
 
 # Change default zim location
 export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim
 
 # Start zim
-[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh
-
+[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh 
 
+# preferences
 export LANG=en_US.UTF-8
 export EDITOR='vim'
 export SSH_KEY_PATH="~/.ssh/rsa_id"
@@ -22,30 +25,28 @@ export TERMINAL="terminator"
 export BROWSER="firefox"
 export PAGER='most'
 
-source ~/.zshrc_functions
-if [ -f $HOME/.zshrc_local ]; 
-then
-source $HOME/.zshrc_local
-fi
-
 # alter path
 export PATH="$HOME/.cargo/bin:$PATH"
-export PATH="/opt/pymol:${PATH}"
 export PATH="$HOME/anaconda3/bin:${PATH}" # binaries
 export PATH="$HOME/bin:${PATH}" # binaries
 export PATH="$HOME/scripts:${PATH}" # scripts
 export PATH="$HOME/.local/bin:${PATH}" # python executeables
 
+# aliases
+alias clip='xsel --clipboard'
+alias groclean='rm \#*'
+alias sm='snakemake'
+alias ls='ls -lh'
+alias workon='source activate' # enable anaconda environ
+
+# config specific to this machine (not copied from dotfiles)
+if [ -f $HOME/.zshrc_local ]; then
+    source $HOME/.zshrc_local
+fi
+
 # fasd autocompletion
 eval "$(fasd --init auto)"
 
 # marker
 [[ -s "$HOME/.local/share/marker/marker.sh" ]] && source "$HOME/.local/share/marker/marker.sh"
 
-# clipboard
-alias clip='xsel --clipboard'
-
-alias groclean='rm \#*'
-alias sm='snakemake'
-alias ls='ls -lh'
-alias workon='source activate' # enable anaconda environ
diff --git a/.zshrc_functions b/.zshrc_functions
deleted file mode 100644
index 9282c2c..0000000
--- a/.zshrc_functions
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/bin/bash
-
-# open a web browser on google for a query
-function google {
-    function urlencode {
-        print "${${(j: :)@}//(#b)(?)/%$[[##16]##${match[1]}]}"
-    }
-
-    xdg-open "https://www.google.com/search?q=`urlencode "${(j: :)@}"`"
-}
-
-# open a web browser on google for a query
-function google {
-    function urlencode {
-        print "${${(j: :)@}//(#b)(?)/%$[[##16]##${match[1]}]}"
-    }
-
-    xdg-open "https://www.google.com/search?q=`urlencode "${(j: :)@}"`"
-}
-
-
-# alter keyboard layout
-setKeyboard() {
-    setxkbmap -layout $1
-}
-
-# download pdb file to current dir
-pdb() {
-    URL=http://www.rcsb.org/pdb/files/$1.pdb.gz
-    if [ -z "$2" ]; then
-        2="./"
-    fi
-
-    wget $URL -P $2
-    gunzip $2/$1.pdb.gz
-}
-
-