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danijoo
2020-09-18 10:41:49 +02:00
parent 2f11129a69
commit 94060f8167
7 changed files with 44 additions and 17 deletions
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10
profiles/pymol/.pymolrc
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@@ -5,6 +5,7 @@ set fetch_path, /tmp
log_open /tmp/pymol_log.pml
set retain_order
load ~/.pymol/chimera_colors.pml
# interface
set overlay, 1
@@ -47,6 +48,10 @@ set sphere_scale, 0.5
# custom colors
set_color sodium, [0.0, 0.5, 1.0]
# bigger dashes
set dash_gap, .35
set dash_length, .3
# shortcuts
set_key F1, toggle sticks, solvent
set_key F2, toggle sticks, (r. POPC or r. POP) and not hydrogen
@@ -61,8 +66,9 @@ set_key F12, ray 1600,1600
alias clean, hide everything, hydrogen or n. 1M* or n. 2M* or n. MC*
alias sf_as_sticks_HCN4, show sticks, residue 478-484 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*); hide cartoon, resi 479-483; show sticks, residue 475+468 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*)
alias sf_as_sticks_HCN4, show sticks, residue 478-484 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*); hide cartoon, resi 479-483;
# show sticks, residue 475+468 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*)
alias sf_as_sticks_HCN1, show sticks, residue 357-362 and (not hydrogen or (hydrogen and neighbor (elem O+N+S))) and not (n. 1M* or n. 2M* or n. MC*); hide cartoon, resi 358-361
alias ionwatch, hide everything; show cartoon; show spheres, n. NA or n. K; sf_as_sticks_HCN4; hide everything, ID 1-1899; hide everything, ID 3799-5695
alias dockfix, as sticks, bonded and not polymer