diff --git a/profiles/base/.aliases b/profiles/base/.aliases index 88cdc5e..f70437d 100644 --- a/profiles/base/.aliases +++ b/profiles/base/.aliases @@ -5,5 +5,12 @@ fi alias clip='xsel --clipboard' alias groclean='rm \#*' alias sm='snakemake' -alias ls='ls -lh' +alias ls='ls --color=auto -lh' alias workon='source activate' # enable anaconda environ +alias cwl="cwl-runner" + +# lhr +alias squeue="ssh lcluster11 squeue" +alias csum="ssh lcluster11 csum" +alias csreport="ssh lcluster11 csreport" +alias scancel="ssh lcluster11 scancel" diff --git a/profiles/base/.condarc b/profiles/base/.condarc new file mode 100644 index 0000000..6114561 --- /dev/null +++ b/profiles/base/.condarc @@ -0,0 +1,7 @@ +channel_priority: strict +channels: + - spyder-ide + - conda-forge + - bioconda + - defaults + - salilab \ No newline at end of file diff --git a/profiles/base/.config/matplotlib/matplotlibrc b/profiles/base/.config/matplotlib/matplotlibrc index 3529c3f..cff748f 100644 --- a/profiles/base/.config/matplotlib/matplotlibrc +++ b/profiles/base/.config/matplotlib/matplotlibrc @@ -397,7 +397,7 @@ legend.fontsize : 10 #figure.titlesize : large # size of the figure title (Figure.suptitle()) #figure.titleweight : normal # weight of the figure title figure.figsize : 11,4.5 # figure size in inches -figure.dpi : 100 # figure dots per inch +figure.dpi : 300 # figure dots per inch #figure.facecolor : white # figure facecolor; 0.75 is scalar gray # figure.edgecolor : white # figure edgecolor figure.autolayout : True # When True, automatically adjust subplot diff --git a/profiles/base/.tmux.conf b/profiles/base/.tmux.conf index d993e80..31c09bc 100644 --- a/profiles/base/.tmux.conf +++ b/profiles/base/.tmux.conf @@ -1,5 +1,13 @@ +<<<<<<< HEAD set-window-option -g xterm-keys on set -s escape-time 10 # faster command timeout set -g history-limit 10000 set -g status-interval 10 +======= +set-option -g mouse on + +# make scrolling with wheels work +bind -n WheelUpPane if-shell -F -t = "#{mouse_any_flag}" "send-keys -M" "if -Ft= '#{pane_in_mode}' 'send-keys -M' 'select-pane -t=; copy-mode -e; send-keys -M'" +bind -n WheelDownPane select-pane -t= \; send-keys -M +>>>>>>> 1f76fd836f0ef1b53fc69ba45322da6824c50465 diff --git a/profiles/base/.vimrc b/profiles/base/.vimrc index 9fd5db4..7303fbc 100644 --- a/profiles/base/.vimrc +++ b/profiles/base/.vimrc @@ -32,7 +32,7 @@ Plugin 'morhetz/gruvbox' let g:vim_markdown_folding_disabled = 1 let g:pymode_python = "python3" -let g:pymode_virtualenv_path = "conda" +let g:pymode_virtualenv_path = "/home/bauer/conda" let g:pymode = 1 let g:pymode_options = 1 " All of your Plugins must be added before the following line diff --git a/profiles/base/.zshrc b/profiles/base/.zshrc index a47fb95..b0414e2 100644 --- a/profiles/base/.zshrc +++ b/profiles/base/.zshrc @@ -1,6 +1,5 @@ export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim [[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh - # source $HOME/bin/antigen.zsh # antigen init $HOME/.antigenrc diff --git a/profiles/desktop/.config/i3/config b/profiles/desktop/.config/i3/config index 4a8326b..ec8c9f0 100644 --- a/profiles/desktop/.config/i3/config +++ b/profiles/desktop/.config/i3/config @@ -234,7 +234,8 @@ bindsym XF86HomePage exec "i3lock -i ~/lockscreens/`ls ~/lockscreens | shuf -n 1 bindsym $mod+Shift+s exec --no-startup-id ~/.config/i3/scripts/change_monitor.sh # reload workspace layouts -exec --no-startup-id "i3-msg 'workspace 9; append_layout /home/bauer/.i3/workspace-9.json'" +#exec --no-startup-id "i3-msg 'workspace 9; append_layout /home/bauer/.i3/workspace-9.json'" exec --no-startup-id nm-applet exec --no-startup-id xfsettingsd +exec --no-startup-id /usr/bin/blueman-applet \ No newline at end of file diff --git a/profiles/desktop/.config/polybar/config b/profiles/desktop/.config/polybar/config index 089fea4..4d1c2dc 100644 --- a/profiles/desktop/.config/polybar/config +++ b/profiles/desktop/.config/polybar/config @@ -48,12 +48,13 @@ font-2 = FontAwesome:size=14;0 [bar/laptop_station] inherit = bar/laptop monitor = ${env:MONITOR:HDMI-2} + [bar/workstation] inherit = bar/base monitor = ${env:MONITOR:DP-2} modules-left = i3 xwindow modules-right = spotify mpd volume filesystem cpu gpu memory date -tray-position = right +tray-position = false tray-padding = 2 font-0 = "Noto Sans:size=11:style=Regular;1" @@ -63,7 +64,7 @@ font-2 = FontAwesome:size=11;0 [bar/workstation2] inherit = bar/workstation monitor = ${env:MONITOR:DP-4} -tray-position = false +tray-position = right [module/xwindow] diff --git a/profiles/pymol/.pymolrc b/profiles/pymol/.pymolrc index d6cd435..781477a 100644 --- a/profiles/pymol/.pymolrc +++ b/profiles/pymol/.pymolrc @@ -25,8 +25,6 @@ set spec_reflect, 0.25 set antialias, 1 set surface_quality, 1 set ray_trace_mode, 0 -] - # hide nonbonded and nbsphreres set nonbonded_transparency, 1 @@ -42,6 +40,8 @@ set cartoon_side_chain_helper, 1 set cartoon_discrete_colors, on set cartoon_highlight_color, gray +# spheres +set sphere_scale, 0.5 # shortcuts set_key F1, toggle sticks, solvent