From 69992167668692b022478b09e74629fb99184f7c Mon Sep 17 00:00:00 2001
From: Daniel Bauer <bauer@cbs.tu-darmstadt.de>
Date: Mon, 25 Mar 2019 08:16:45 +0100
Subject: [PATCH] snakemake autocompletion

---
 profiles/base/.functions | 10 ++++++++++
 profiles/base/.zshrc     |  1 +
 2 files changed, 11 insertions(+)
 create mode 100644 profiles/base/.functions

diff --git a/profiles/base/.functions b/profiles/base/.functions
new file mode 100644
index 0000000..414ad85
--- /dev/null
+++ b/profiles/base/.functions
@@ -0,0 +1,10 @@
+sm_autocomplete() {
+	# make zsh emulate bash if necessary
+	if [[ -n "$ZSH_VERSION" ]]; then
+    	autoload bashcompinit
+    	bashcompinit
+	fi
+
+	snakemake_options=$(snakemake --snakefile Snakefile --list)
+	complete -W "${snakemake_options}" 'snakemake'	
+}
\ No newline at end of file
diff --git a/profiles/base/.zshrc b/profiles/base/.zshrc
index 0cedc0f..ba04bc4 100644
--- a/profiles/base/.zshrc
+++ b/profiles/base/.zshrc
@@ -18,6 +18,7 @@ if [ -f "$HOME/.environment.local" ]; then
 fi
 
 source $HOME/.aliases
+source $HOME/.functions
 
 if [ -z "$GMXRC" ]; then
     GMXRC="/opt/gromacs-2018/bin/GMXRC"