diff --git a/.zshrc_local_bioinfo4 b/.zshrc_local_bioinfo4 deleted file mode 100644 index f6df954..0000000 --- a/.zshrc_local_bioinfo4 +++ /dev/null @@ -1,26 +0,0 @@ -# gromacs -if [ -z "$GMXRC" ]; then - GMXRC="/opt/gromacs-2018/bin/GMXRC" -fi -source $GMXRC - -export CUDA_HOME=/opt/cuda - -# wham -export PATH="/opt/wham/wham:/opt/wham/wham-2d:${PATH}" # binaries - -# pymol2 -export PATH="/opt/pymol2:$PATH" - -# python -PYTHONPATH="$PYTHONPATH:/opt/modeller/modlib:/opt/modeller/lib/x86_64-intel8/python3.3" -export PYTHONPATH -export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/modeller/lib/x86_64-intel8" - - -#backup -#if [[ ! -e /tmp/$(date +%u).sem ]] -#then -# touch /tmp/$(date +%u).sem -# bash ~/.sync_home/sync.sh -#fi diff --git a/.zshrc_local_t460s b/.zshrc_local_t460s deleted file mode 100644 index 8a01172..0000000 --- a/.zshrc_local_t460s +++ /dev/null @@ -1,23 +0,0 @@ -source /opt/gromacs-2018.30/bin/GMXRC - -# wham -export PATH="/opt/wham/wham:/opt/wham/wham-2d:${PATH}" # binaries - -#anaconda -export PATH="/home/bauer/anaconda3/bin:$PATH" - -# python -#PYTHONPATH="$PYTHONPATH:/opt/modeller/modlib:/opt/modeller/lib/x86_64-intel8/python3.3" -#export PYTHONPATH -#export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/modeller/lib/x86_64-intel8" - -alias mountscratch="sshfs bauer@bioinfo4:/scratch ~/scratch" - -function cd { - builtin cd "$@" - if [ -d "venv" ] ; then - source venv/bin/activate - fi -} - - diff --git a/.zshrc_t460s b/.zshrc_t460s deleted file mode 100644 index f2c4061..0000000 --- a/.zshrc_t460s +++ /dev/null @@ -1,28 +0,0 @@ - -# Change default zim location -export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim - -# Start zim -[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh - -export LANG=en_US.UTF-8 -export EDITOR='vim' -export SSH_KEY_PATH="~/.ssh/rsa_id" -export TERMINAL="terminator" -export BROWSER="firefox" -export PAGER=most - -# source other szh stuff -source ~/.zshrc_functions -source ~/.zshrc_local - -# alter path -export PATH="$HOME/bin:${PATH}" # binaries -export PATH="$HOME/scripts:${PATH}" # scripts -export PATH="$HOME/.local/bin:${PATH}" # local executeables - -# fasd autocompletion -eval "$(fasd --init auto)" - -# marker -[[ -s "$HOME/.local/share/marker/marker.sh" ]] && source "$HOME/.local/share/marker/marker.sh" diff --git a/.config/matplotlib/matplotlibrc b/profiles/base/.config/matplotlib/matplotlibrc similarity index 99% rename from .config/matplotlib/matplotlibrc rename to profiles/base/.config/matplotlib/matplotlibrc index 3608dad..3529c3f 100644 --- a/.config/matplotlib/matplotlibrc +++ b/profiles/base/.config/matplotlib/matplotlibrc @@ -314,9 +314,9 @@ axes.labelcolor : black # digits from tick labels. axes.spines.left : True # display axis spines -# axes.spines.bottom : True -axes.spines.top : False -axes.spines.right : False +axes.spines.bottom : True +axes.spines.top : True +axes.spines.right : True #axes.unicode_minus : True # use unicode for the minus symbol diff --git a/.config/matplotlib/stylelib/hcnd.mplstyle b/profiles/base/.config/matplotlib/stylelib/hcnd.mplstyle similarity index 96% rename from .config/matplotlib/stylelib/hcnd.mplstyle rename to profiles/base/.config/matplotlib/stylelib/hcnd.mplstyle index ed2bd07..c7d2443 100644 --- a/.config/matplotlib/stylelib/hcnd.mplstyle +++ b/profiles/base/.config/matplotlib/stylelib/hcnd.mplstyle @@ -266,7 +266,7 @@ text.usetex : False # use latex for all text handling. The following fo # '%%X' will use the locale time representation and '%%c' will use the full locale datetime # representation. # These values map to the scales: -# {'year': 365, 'month': 30, 'day': 1, 'hour': 1/24, 'minute': 1 / (24 * 60)} +# {'year': 365, 'month': 30, 'day': 1, 'hour': 1/28, 'minute': 1 / (28 * 60)} # date.autoformatter.year : %Y # date.autoformatter.month : %Y-%m @@ -286,8 +286,8 @@ axes.edgecolor : black # axes edge color axes.grid : True # display grid or not #axes.titlesize : large # fontsize of the axes title #axes.titlepad : 6.0 # pad between axes and title in points -#axes.labelsize : medium # fontsize of the x any y labels -#axes.labelpad : 4.0 # space between label and axis +axes.labelsize : 28 # fontsize of the x any y labels +axes.labelpad : 14.0 # space between label and axis #axes.labelweight : normal # weight of the x and y labels axes.labelcolor : black #axes.axisbelow : 'line' # draw axis gridlines and ticks below @@ -314,25 +314,25 @@ axes.labelcolor : black # digits from tick labels. axes.spines.left : True # display axis spines -# axes.spines.bottom : True -axes.spines.top : False -axes.spines.right : False +axes.spines.bottom : True +axes.spines.top : True +axes.spines.right : True #axes.unicode_minus : True # use unicode for the minus symbol # rather than hyphen. See # http://en.wikipedia.org/wiki/Plus_and_minus_signs#Character_codes #axes.prop_cycle: cycler('color', ['2864af', 'cc3f39', '2D882D', 'e8e634', '423687', '903c3f']) -#axes.prop_cycle : cycler('color', ['348ABD', '7A68A6', 'A60628', '467821', 'CF4457', '188487', 'E24A33']) - # E24A33 : orange +#axes.prop_cycle : cycler('color', ['348ABD', '7A68A6', 'A60628', '467821', 'CF4457', '188487', 'E28A33']) + # E28A33 : orange # 7A68A6 : purple # 348ABD : blue # 188487 : turquoise # A60628 : red # CF4457 : pink # 467821 : green -axes.prop_cycle : cycler('color', ['e41a1c', '0971e6', '41933e', '853990', 'eb7f14', '444444', 'a1a1a1', 'ff728a', '37c7c5']) -#axes.prop_cycle : cycler('color', ['e41a1c', '0971e6', '41933e', '853990', 'eb7f14', 'f7cf00', '444444', 'a1a1a1', 'ff728a', '37c7c5']) +axes.prop_cycle : cycler('color', ['e41a1c', '0971e6', '41933e', '853990', 'eb7f28', '444444', 'a1a1a1', 'ff728a', '37c7c5']) +#axes.prop_cycle : cycler('color', ['e41a1c', '0971e6', '41933e', '853990', 'eb7f28', 'f7cf00', '444444', 'a1a1a1', 'ff728a', '37c7c5']) patch.facecolor: 0072B2 axes.autolimit_mode : data # How to scale axes limits to the data. @@ -349,18 +349,18 @@ axes.ymargin : .00 # y margin See `axes.Axes.margins` # see http://matplotlib.org/api/axis_api.html#matplotlib.axis.Tick #xtick.major.size : 10 # major tick size in points #xtick.minor.size : 10 # minor tick size in points -xtick.major.pad : 6 # distance to major tick label in points +xtick.major.pad : 6 # distance to major tick label ibeln points xtick.minor.pad : 6 # distance to the minor tick label in points -xtick.color : 808080 # color of the tick labels -#xtick.labelsize : medium # fontsize of the tick labels +xtick.color : black #808080 # color of the tick labels +xtick.labelsize : 28 #medium # fontsize of the tick labels xtick.direction : out # direction: in or out #ytick.major.size : 0 # major tick size in points #ytick.minor.size : 0 # minor tick size in points ytick.major.pad : 6 # distance to major tick label in points ytick.minor.pad : 6 # distance to the minor tick label in points -ytick.color : 808080 # color of the tick labels -#ytick.labelsize : medium # fontsize of the tick labels +ytick.color : black # 808080 # color of the tick labels +ytick.labelsize : 28 #medium # fontsize of the tick labels ytick.direction : out # direction: in or out @@ -382,7 +382,7 @@ legend.edgecolor : 1 # background patch boundary color #legend.numpoints : 1 # the number of marker points in the legend line #legend.scatterpoints : 1 # number of scatter points #legend.markerscale : 1.0 # the relative size of legend markers vs. original -legend.fontsize : 10 +legend.fontsize : 28 # Dimensions as fraction of fontsize: #legend.borderpad : 0.4 # border whitespace #legend.labelspacing : 0.5 # the vertical space between the legend entries @@ -397,7 +397,7 @@ legend.fontsize : 10 #figure.titlesize : large # size of the figure title (Figure.suptitle()) #figure.titleweight : normal # weight of the figure title figure.figsize : 11,4.5 # figure size in inches -figure.dpi : 100 # figure dots per inch +figure.dpi : 300 # figure dots per inch #figure.facecolor : white # figure facecolor; 0.75 is scalar gray # figure.edgecolor : white # figure edgecolor figure.autolayout : True # When True, automatically adjust subplot diff --git a/.config/matplotlib/stylelib/poster.mplstyle b/profiles/base/.config/matplotlib/stylelib/poster.mplstyle similarity index 100% rename from .config/matplotlib/stylelib/poster.mplstyle rename to profiles/base/.config/matplotlib/stylelib/poster.mplstyle diff --git a/.config/matplotlib/stylelib/presentation.mplstyle b/profiles/base/.config/matplotlib/stylelib/presentation.mplstyle similarity index 100% rename from .config/matplotlib/stylelib/presentation.mplstyle rename to profiles/base/.config/matplotlib/stylelib/presentation.mplstyle diff --git a/.config/matplotlib/stylelib/publication.mplstyle b/profiles/base/.config/matplotlib/stylelib/publication.mplstyle similarity index 100% rename from .config/matplotlib/stylelib/publication.mplstyle rename to profiles/base/.config/matplotlib/stylelib/publication.mplstyle