update

profiles/base/.functions

@@ -1,18 +0,0 @@
-sm_autocomplete() {
-	# make zsh emulate bash if necessary
-	if [[ -n "$ZSH_VERSION" ]]; then
-    	autoload bashcompinit
-    	bashcompinit
-	fi
-
-	snakemake_options=$(snakemake --snakefile Snakefile --list)
-	complete -W "${snakemake_options}" 'snakemake'	
-}
-
-cd() {
-    builtin cd "$@"
-    if [ -f "Snakefile" ]; then
-        sm_autocomplete
-    fi  
-
-}

profiles/base/.zshrc

@@ -9,7 +9,6 @@ if [ -f "$HOME/.environment.local" ]; then
 	source $HOME/.environment.local
 fi
 source $HOME/.aliases
-source $HOME/.functions
 # config specific to this machine
 if [ -f $HOME/.zshrc_local ]; then
     source $HOME/.zshrc_local
@@ -41,3 +40,7 @@ fi
 unset __conda_setup
 # <<< conda initialize <<<
 
+# snakemake autocomplete
+if hash snakemake 2>/dev/null; then
+    compdef _gnu_generic snakemake
+fi