update

profiles/base/.aliases

@@ -16,10 +16,10 @@ function gitignore() {
 }
 
 # lhr
-alias squeue="ssh lcluster11 squeue"
+alias squeue="ssh lcluster17 squeue"
-alias csum="ssh lcluster11 csum"
+alias csum="ssh lcluster17 csum"
-alias csreport="ssh lcluster11 csreport"
+alias csreport="ssh lcluster17 csreport"
-alias scancel="ssh lcluster11 scancel"
+alias scancel="ssh lcluster17 scancel"
 
 # snakemake use all cores by default
 sm() {

profiles/base/.gitconfig

@@ -2,7 +2,7 @@
 [user]
 # Please adapt and uncomment the following lines:
 	name = daniel
-	email = bauer@cbs.tu-darmstadt.de
+	email = github@dbauer.me
 [pack]
 	threads = 8
 [merge]
@@ -12,3 +12,6 @@
 [alias]
 	up = !git pull --rebase --prune $@ && git submodule update --init --recursive
 	cm = !git add -A && git commit -m 
+[credential "https://github.com"]
+	helper = 
+	helper = !/home/bauer/conda/bin/gh auth git-credential

profiles/shared/.config/i3/scripts/change_monitor.sh

@@ -4,24 +4,17 @@ INTERNAL_OUTPUT="eDP1"
 
 # if we don't have a file, start at zero
 if [ ! -f "/tmp/monitor_mode.dat" ] ; then
-  monitor_mode="all"
+  monitor_mode="CLONES"
-
 # otherwise read the value from the file
 else
   monitor_mode=`cat /tmp/monitor_mode.dat`
 fi
 
-if [ $monitor_mode = "all" ]; then
+if [ $monitor_mode = "CLONES" ]; then
         monitor_mode="EXTERNAL"
-        xrandr --output $INTERNAL_OUTPUT --off --output $EXTERNAL_OUTPUT --auto
+        $HOME/.screenlayout/external.sh
 elif [ $monitor_mode = "EXTERNAL" ]; then
-        monitor_mode="INTERNAL"
-        xrandr --output $INTERNAL_OUTPUT --auto --output $EXTERNAL_OUTPUT --off
-elif [ $monitor_mode = "INTERNAL" ]; then
         monitor_mode="CLONES"
-        xrandr --output $INTERNAL_OUTPUT --auto --output $EXTERNAL_OUTPUT --auto --same-as $INTERNAL_OUTPUT
+        $HOME/.screenlayout/clone.sh
-else
-        monitor_mode="all"
-        xrandr --output $INTERNAL_OUTPUT --auto --output $EXTERNAL_OUTPUT --auto --right-of $INTERNAL_OUTPUT
 fi
 echo "${monitor_mode}" > /tmp/monitor_mode.dat

profiles/shared/.config/sublime-text-3/Packages/User/Package Control.sublime-settings

@@ -9,6 +9,7 @@
 		"ANSIescape",
 		"bioSyntax",
 		"Color Convert",
+		"Color Highlight",
 		"Color Highlighter",
 		"CSV Record View",
 		"CWL Syntax Highlighting",

profiles/shared/.config/sublime-text-3/Packages/User/Preferences.sublime-settings

@@ -8,13 +8,116 @@
 		"Gromacs",
 		"solvated",
 		"parallization",
+		"superfamily",
+		"channelopathies",
+		"unpolar",
+		"Drosophila",
+		"proteinaceous",
+		"Cryo",
+		"Ligand",
+		"ligands",
+		"intra",
+		"selectivty",
+		"nucleotides",
+		"glutamate",
+		"ligand",
+		"subunit",
+		"phenylalanine",
+		"arginines",
+		"conformational",
+		"Thermodynamically",
+		"reweighting",
+		"subunits",
+		"cytosolic",
+		"hyperpolarization",
+		"Energetics",
+		"multimers",
+		"cooperativity",
+		"oxygens",
+		"intercalating",
+		"desolvation",
+		"configurational",
+		"Phylogenic",
+		"subtypes",
+		"isoforms",
+		"hyperpolarizing",
+		"neuropathic",
+		"encephalopathy",
+		"subtype",
+		"repolarize",
+		"repolarization",
+		"ivabradine",
+		"pectoris",
+		"isoform",
+		"intracellular",
+		"unselective",
+		"Carbonyl",
+		"tetrad",
+		"atomistic",
+		"virial",
+		"rescaling",
+		"equipartition",
+		"isothermal",
+		"intramolecular",
+		"planarity",
+		"dihedral",
+		"integrators",
+		"Verlet",
+		"bilayer",
+		"biomolecules",
+		"equilibrate",
+		"equilibration",
+		"equilibrated",
+		"rotamer",
+		"allosteric",
+		"observables",
+		"polarizeable",
+		"childs",
+		"preexponential",
+		"wetlab",
+		"genotype",
+		"missense",
+		"electrophysiological",
+		"homozygous",
+		"heterozygous",
+		"heteromeric",
+		"aspartate",
+		"homomeric",
+		"solvation",
+		"interhelical",
+		"glutamic",
+		"carboxyl",
+		"electrophysiology",
+		"hydrophobicity",
+		"Waals",
+		"transduct",
+		"glycine",
+		"complexed",
+		"tetrameric",
+		"heterozygously",
+		"carbonyl",
+		"Titratable",
+		"protonated",
+		"pre",
+		"semiisotropic",
+		"barostat",
+		"unbiasing",
+		"bayesian",
+		"desolvated",
+		"unphysiologically",
+		"intercalation",
+		"centroid",
+		"unsampled",
+		"thermodynamically",
+		"combinatorial",
+		"energetics",
 	],
 	"auto_complete": false,
 	"color_scheme": "Packages/gruvbox/gruvbox (Dark) (Medium).sublime-color-scheme",
 	"detect_indentation": false,
 	"dictionary": "Packages/Language - English/en_US.dic",
 	"font_face": "Hack for Powerline Regular",
-	"font_size": 13,
+	"font_size": 15,
 	"hot_exit": false,
 	"ignored_packages":
 	[
@@ -30,7 +133,9 @@
 	],
 	"ignored_words":
 	[
-		"crosslink"
+		"backmapping",
+		"challanging",
+		"crosslink",
 	],
 	"line_numbers": true,
 	"neovintageous_build_version": 11100,