From 4efdda7087fa3ae4a32c2645f10dbd3e3111054e Mon Sep 17 00:00:00 2001
From: Daniel Bauer <bauer@cbs.tu-darmstadt.de>
Date: Tue, 11 Sep 2018 15:45:44 +0200
Subject: [PATCH] shell files updated

---
 shell/.zimrc                | 31 ++++++++++++-------------------
 shell/.zshrc                |  4 +---
 shell/.zshrc_local_bioinfo4 | 26 ++++++++++++++++++++++++++
 3 files changed, 39 insertions(+), 22 deletions(-)
 create mode 100644 shell/.zshrc_local_bioinfo4

diff --git a/shell/.zimrc b/shell/.zimrc
index c2fa423..19597e6 100644
--- a/shell/.zimrc
+++ b/shell/.zimrc
@@ -9,12 +9,13 @@
 #
 
 # Select what modules you would like enabled.
-# The second line of modules may depend on options set by modules in the first
-# line. These dependencies are noted on the respective module's README.md.
-zmodules=(directory environment git history input utility custom \
-          syntax-highlighting history-substring-search prompt completion)
+# The second line of modules may depend on options set by modules in the first line.
+# These dependencies are noted on the respective module's README.md.
+zmodules=(ssh directory environment git history input utility meta custom \
+          syntax-highlighting history-substring-search prompt completion fasd)
 
 
+zssh_ids=(id_ed25519)
 ###################
 # MODULE SETTINGS #
 ###################
@@ -24,7 +25,11 @@ zmodules=(directory environment git history input utility custom \
 #
 
 # Set your desired prompt here
-zprompt_theme='eriner'
+#
+POWERLEVEL9K_PROMPT_ON_NEWLINE=true
+zprompt_theme='powerlevel9k'
+#zprompt_theme='eriner'
+#zprompt_theme='clint'
 
 #
 # Completion
@@ -42,24 +47,13 @@ zprompt_theme='eriner'
 # See: http://zsh.sourceforge.net/Doc/Release/Options.html#Input_002fOutput
 #setopt CORRECT
 
-#
-# Environment
-#
-
-# Set the string below to the desired terminal title format string.
-# The terminal title is redrawn upon directory change, however, variables like 
-# ${PWD} are only evaluated once. Use prompt expansion strings for dynamic data:
-#   http://zsh.sourceforge.net/Doc/Release/Prompt-Expansion.html#Simple-Prompt-Escapes
-# The example below uses the following format: 'username@host:/current/directory'
-ztermtitle='%n@%m:%~'
-
 #
 # Input
 #
 
 # Uncomment to enable double-dot expansion.
 # This appends '../' to your input for each '.' you type after an initial '..'
-#zdouble_dot_expand='true'
+zdouble_dot_expand='true'
 
 #
 # Syntax-Highlighting
@@ -76,9 +70,9 @@ zhighlighters=(main brackets)
 #
 # SSH
 #
+zssh_ids=(id_rsa)
 
 # Load these ssh identities with the ssh module
-#zssh_ids=(id_rsa)
 
 
 #
@@ -90,4 +84,3 @@ zhighlighters=(main brackets)
 
 # Load any helper scripts as defined here
 #zpacman_helper=(aur)
-
diff --git a/shell/.zshrc b/shell/.zshrc
index 7a31719..fd37587 100644
--- a/shell/.zshrc
+++ b/shell/.zshrc
@@ -15,6 +15,7 @@ export EDITOR='vim'
 export SSH_KEY_PATH="~/.ssh/rsa_id"
 export TERMINAL="terminator"
 export BROWSER="firefox"
+export PAGER='most'
 
 source ~/.zshrc_functions
 source ~/.zshrc_local
@@ -29,6 +30,3 @@ eval "$(fasd --init auto)"
 
 # marker
 [[ -s "$HOME/.local/share/marker/marker.sh" ]] && source "$HOME/.local/share/marker/marker.sh"
-
-# the fuck?
-eval $(thefuck --alias)
diff --git a/shell/.zshrc_local_bioinfo4 b/shell/.zshrc_local_bioinfo4
new file mode 100644
index 0000000..f6df954
--- /dev/null
+++ b/shell/.zshrc_local_bioinfo4
@@ -0,0 +1,26 @@
+# gromacs
+if [ -z "$GMXRC" ]; then
+    GMXRC="/opt/gromacs-2018/bin/GMXRC"
+fi
+source $GMXRC
+
+export CUDA_HOME=/opt/cuda
+
+# wham
+export PATH="/opt/wham/wham:/opt/wham/wham-2d:${PATH}" # binaries
+
+# pymol2
+export PATH="/opt/pymol2:$PATH"
+
+# python
+PYTHONPATH="$PYTHONPATH:/opt/modeller/modlib:/opt/modeller/lib/x86_64-intel8/python3.3"
+export PYTHONPATH
+export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/modeller/lib/x86_64-intel8"
+
+
+#backup
+#if [[ ! -e /tmp/$(date +%u).sem ]]
+#then
+#    touch /tmp/$(date +%u).sem
+#    bash ~/.sync_home/sync.sh
+#fi