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Merge branch 'master' of github.com:danijoo/dotfiles

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This commit is contained in:
danijoo
2020-06-12 12:50:04 +02:00
parent 7c84ab2d84 2f11129a69
commit 48d3d269e5
17 changed files with 2284 additions and 49 deletions
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2
profiles/base/.aliases
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@@ -23,4 +23,4 @@ alias scancel="ssh lcluster11 scancel"
# faster sshfs
#alias sshfs="sshfs -o Ciphers=arcfour,Compression=no,auto_cache"
alias sshfs="sshfs -o Compression=no,auto_cache"
#alias sshfs="sshfs -o Compression=no,auto_cache"

14
profiles/base/.antigenrc
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@@ -1,11 +1,11 @@
antigen use oh-my-zsh --debug
antigen use oh-my-zsh
# bundles
antigen bundle git
antigen bundle zsh-users/zsh-completions
antigen bundle pip
antigen bundle zsh-users/zsh-syntax-highlighting
antigen bundle zsh-users/zsh-history-substring-search
#antigen bundle git
#antigen bundle zsh-users/zsh-completions
#antigen bundle pip
#antigen bundle zsh-users/zsh-syntax-highlighting
#antigen bundle zsh-users/zsh-history-substring-search
antigen bundle command-not-found
@@ -24,4 +24,4 @@ POWERLEVEL9K_ANACONDA_FOREGROUND='111'
POWERLEVEL9K_PROMPT_ON_NEWLINE=true
antigen theme bhilburn/powerlevel9k powerlevel9k
antigen apply
#antigen apply

18
profiles/base/.config/matplotlib/matplotlibrc
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@@ -286,7 +286,7 @@ axes.edgecolor : black # axes edge color
axes.grid : True # display grid or not
#axes.titlesize : large # fontsize of the axes title
#axes.titlepad : 6.0 # pad between axes and title in points
#axes.labelsize : medium # fontsize of the x any y labels
axes.labelsize : 16 #medium # fontsize of the x any y labels
#axes.labelpad : 4.0 # space between label and axis
#axes.labelweight : normal # weight of the x and y labels
axes.labelcolor : black
@@ -315,8 +315,8 @@ axes.labelcolor : black
axes.spines.left : True # display axis spines
axes.spines.bottom : True
axes.spines.top : True
axes.spines.right : True
axes.spines.top : False
axes.spines.right : False
#axes.unicode_minus : True # use unicode for the minus symbol
@@ -344,16 +344,16 @@ axes.ymargin : .00 # y margin See `axes.Axes.margins`
#xtick.minor.size : 10 # minor tick size in points
xtick.major.pad : 6 # distance to major tick label in points
xtick.minor.pad : 6 # distance to the minor tick label in points
xtick.color : 797979 # color of the tick labels
#xtick.labelsize : medium # fontsize of the tick labels
xtick.color : 000000 #797979 # color of the tick labels
xtick.labelsize : 16# medium # fontsize of the tick labels
xtick.direction : out # direction: in or out
#ytick.major.size : 0 # major tick size in points
#ytick.minor.size : 0 # minor tick size in points
ytick.major.pad : 6 # distance to major tick label in points
ytick.minor.pad : 6 # distance to the minor tick label in points
ytick.color : 797979 # color of the tick labels
#ytick.labelsize : medium # fontsize of the tick labels
ytick.color : 000000 #797979 # color of the tick labels
ytick.labelsize : 16 #medium # fontsize of the tick labels
ytick.direction : out # direction: in or out
@@ -389,7 +389,7 @@ legend.fontsize : 8 # 10
# See http://matplotlib.org/api/figure_api.html#matplotlib.figure.Figure
#figure.titlesize : large # size of the figure title (Figure.suptitle())
#figure.titleweight : normal # weight of the figure title
figure.figsize : 11,4.5 # figure size in inches
figure.figsize : 6.4,4.8 # figure size in inches
figure.dpi : 300 # figure dots per inch
#figure.facecolor : yellow #white # figure facecolor; 0.75 is scalar gray
# figure.edgecolor : white # figure edgecolor
@@ -468,7 +468,7 @@ scatter.marker : o # The default marker type for scatter plots.
# the default savefig params can be different from the display params
# e.g., you may want a higher resolution, or to make the figure
# background white
#savefig.dpi : figure # figure dots per inch or 'figure'
savefig.dpi : 300 # figure dots per inch or 'figure'
#savefig.facecolor : white # figure facecolor when saving
#savefig.edgecolor : white # figure edgecolor when saving
#savefig.format : png # png, ps, pdf, svg

3
profiles/base/.gitconfig
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@@ -1,7 +1,8 @@
# This is Git's per-user configuration file.
[user]
# Please adapt and uncomment the following lines:
name = Daniel Bauer
name = daniel
email = bauer@cbs.tu-darmstadt.de
[pack]
threads = 8
[merge]

4
profiles/base/.local/share/marker/user_commands.txt
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@@ -1,3 +1,5 @@
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs-2019.1/ -DCMAKE_C_COMPILER=/usr/bin/gcc-4.9 -DCMAKE_CXX_COMPILER=/usr/bin/g++-4.9##gmx_compile
git clone git@git.compbiol.bio.tu-darmstadt.de:Daniel/md-template.git sim##md-template
git clone git@git.compbiol.bio.tu-darmstadt.de:Daniel/build_system.git {{folder}} && cd {{folder}}##build_system
git clone git@git.compbiol.bio.tu-darmstadt.de:Daniel/build_system.git {{folder}} && cd {{folder}}##build_system
cookiecutter git@git.compbiol.bio.tu-darmstadt.de:Daniel/cookiecutter-md-template.git##cookiecutter-md-template
cookiecutter git@git.compbiol.bio.tu-darmstadt.de:Daniel/cookiecutter-mpt.git##cookiecutter MPT

3
profiles/base/.vimrc
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@@ -30,6 +30,9 @@ Plugin 'godlygeek/tabular'
Plugin 'plasticboy/vim-markdown'
Plugin 'morhetz/gruvbox'
Plugin 'preservim/nerdcommenter'
Plugin 'jpalardy/vim-slime'
let g:slime_target = "x11"
let g:vim_markdown_folding_disabled = 1
let g:pymode_python = "python3"

45
profiles/base/.zgenrc Normal file
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@@ -0,0 +1,45 @@
#!/usr/bin/zsh
export TERM="xterm-256color"
zmodules=(ssh directory environment git history input utility custom \
syntax-highlighting history-substring-search prompt completion fasd autosuggestions)
DEFAULT_USER=bauer
POWERLEVEL9K_LEFT_PROMPT_ELEMENTS=(ssh context dir vcs anaconda)
POWERLEVEL9K_RIGHT_PROMPT_ELEMENTS=(background_jobs status time)
# Anaconda
POWERLEVEL9K_ANACONDA_RIGHT_DELIMITER='>'
POWERLEVEL9K_ANACONDA_LEFT_DELIMITER='<'
POWERLEVEL9K_ANACONDA_BACKGROUND='24'
POWERLEVEL9K_ANACONDA_FOREGROUND='111'
POWERLEVEL9K_PROMPT_ON_NEWLINE=true
source "${HOME}/.zgen/zgen.zsh"
if ! zgen saved; then
echo "generating zgen save"
zgen oh-my-zsh
zgen oh-my-zsh plugins/git
zgen oh-my-zsh plugins/sudo
zgen oh-my-zsh plugins/command-not-found
zgen oh-my-zsh plugins/git
zgen oh-my-zsh plugins/debian
zgen oh-my-zsh plugins/tmux
zgen oh-my-zsh plugins/vundle
zgen oh-my-zsh plugins/ssh-agent
zgen oh-my-zsh plugins/copydir
zgen load zsh-users/zsh-syntax-highlighting.git
zgen load zsh-users/zsh-history-substring-search.git
zgen load tarruda/zsh-autosuggestions.git
zgen load bhilburn/powerlevel9k powerlevel9k
zgen save
fi

18
profiles/base/.zshrc
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@@ -1,8 +1,8 @@
export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim
[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh
# source $HOME/bin/antigen.zsh
# antigen init $HOME/.antigenrc
#export ZIM_HOME=${ZDOTDIR:-${HOME}}/.zim
#[[ -s ${ZIM_HOME}/init.zsh ]] && source ${ZIM_HOME}/init.zsh
#source $HOME/bin/antigen.zsh
#antigen init $HOME/.antigenrc
source "${HOME}/.zgenrc"
# source other dotfiles
source $HOME/.environment
@@ -19,7 +19,7 @@ else
if [ -f "/home/bauer/conda/etc/profile.d/conda.sh" ]; then
. "/home/bauer/conda/etc/profile.d/conda.sh"
else
export PATH="$PATH:/home/bauer/conda/bin"
export PATH="/home/bauer/conda/bin:$PATH"
fi
fi
unset __conda_setup
@@ -42,6 +42,6 @@ eval "$(fasd --init auto)"
[[ -s "$HOME/.local/share/marker/marker.sh" ]] && source "$HOME/.local/share/marker/marker.sh"
# snakemake autocomplete
if hash snakemake 2>/dev/null; then
compdef _gnu_generic snakemake
fi
#if hash snakemake 2>/dev/null; then
# compdef _gnu_generic snakemake
#fi