fix: linter and unit tests

src/mcp_cordra/server.py

@@ -8,10 +8,10 @@ from mcp.server.fastmcp import FastMCP
 from mcp.server.fastmcp.resources import FunctionResource
 
 from .client import (
+    CordraAuthenticationError,
     CordraClient,
     CordraClientError,
     CordraNotFoundError,
-    CordraAuthenticationError,
 )
 from .config import CordraConfig
 
@@ -52,8 +52,8 @@ async def get_cordra_object(prefix: str, suffix: str) -> str:
 
     except ValueError as e:
         raise RuntimeError(f"Invalid parameters: {e}") from e
-    except CordraNotFoundError:
-        raise RuntimeError(f"Object not found: {object_id}")
+    except CordraNotFoundError as e:
+        raise RuntimeError(f"Object not found: {object_id}") from e
     except CordraAuthenticationError as e:
         raise RuntimeError(f"Authentication failed: {e}") from e
     except CordraClientError as e:
@@ -66,8 +66,8 @@ async def create_schema_resource(schema_name: str) -> str:
         schema_object = await cordra_client.get_schema(schema_name)
         schema_dict = schema_object.model_dump()
         return json.dumps(schema_dict, indent=2)
-    except CordraNotFoundError:
-        raise RuntimeError(f"Schema not found: {schema_name}")
+    except CordraNotFoundError as e:
+        raise RuntimeError(f"Schema not found: {schema_name}") from e
     except CordraAuthenticationError as e:
         raise RuntimeError(f"Authentication failed: {e}") from e
     except CordraClientError as e:

tests/test_client.py

@@ -8,7 +8,6 @@ from mcp_cordra.client import (
     CordraClient,
     CordraClientError,
     CordraNotFoundError,
-    CordraAuthenticationError,
     DigitalObject,
 )
 from mcp_cordra.config import CordraConfig

tests/test_server.py

@@ -145,103 +145,88 @@ class TestGetCordraObject:
         assert parsed_result["payloads"] is None
 
 
-class TestListCordraSchemas:
-    """Test the list_cordra_schemas resource handler."""
+class TestSchemaResourceFunctions:
+    """Test the schema resource functions."""
 
     @patch('mcp_cordra.server.cordra_client')
-    async def test_list_schemas_success(self, mock_client):
-        """Test successful schema listing."""
-        mock_schemas = [
-            {"content": {"name": "User"}, "identifier": "test/user-schema"},
-            {"content": {"name": "Project"}, "identifier": "test/project-schema"},
-            {"content": {"name": "Document"}, "identifier": "test/doc-schema"},
-            {"content": {"name": "CaptureEvent"}, "identifier": "test/capture-schema"}
-        ]
-        mock_client.find = AsyncMock(return_value=mock_schemas)
+    async def test_create_schema_resource_success(self, mock_client):
+        """Test successful schema resource creation."""
+        mock_schema = DigitalObject(
+            id="test/user-schema",
+            type="Schema",
+            content={"name": "User", "type": "object", "properties": {}}
+        )
+        mock_client.get_schema = AsyncMock(return_value=mock_schema)
 
-        from mcp_cordra.server import list_cordra_schemas
-        result = await list_cordra_schemas()
+        from mcp_cordra.server import create_schema_resource
+        result = await create_schema_resource("User")
 
         # Verify the result is valid JSON
         parsed_result = json.loads(result)
-        assert "schemas" in parsed_result
-        assert "count" in parsed_result
-        assert parsed_result["count"] == 4
-        assert "User" in parsed_result["schemas"]
-        assert "Project" in parsed_result["schemas"] 
-        assert "Document" in parsed_result["schemas"]
-        assert "CaptureEvent" in parsed_result["schemas"]
+        assert parsed_result["id"] == "test/user-schema"
+        assert parsed_result["type"] == "Schema"
+        assert parsed_result["content"]["name"] == "User"
+
+        # Verify the client was called with correct schema name
+        mock_client.get_schema.assert_called_once_with("User")
+
+    @patch('mcp_cordra.server.cordra_client')
+    async def test_create_schema_resource_not_found(self, mock_client):
+        """Test schema resource creation with schema not found."""
+        mock_client.get_schema = AsyncMock(side_effect=CordraNotFoundError("Schema not found"))
+
+        from mcp_cordra.server import create_schema_resource
+        with pytest.raises(RuntimeError) as exc_info:
+            await create_schema_resource("NonExistent")
+
+        assert "Schema not found: NonExistent" in str(exc_info.value)
+        mock_client.get_schema.assert_called_once_with("NonExistent")
+
+    @patch('mcp_cordra.server.cordra_client')
+    async def test_register_schema_resources_success(self, mock_client):
+        """Test successful schema resource registration."""
+        mock_schemas = [
+            {"content": {"name": "User"}, "id": "test/user-schema"},
+            {"content": {"name": "Project"}, "id": "test/project-schema"},
+            {"content": {"name": "Document"}, "id": "test/doc-schema"}
+        ]
+        mock_client.find = AsyncMock(return_value=mock_schemas)
+
+        # Mock the mcp.add_resource method
+        with patch('mcp_cordra.server.mcp') as mock_mcp:
+            from mcp_cordra.server import register_schema_resources
+            await register_schema_resources()
 
         # Verify the client was called with correct query
         mock_client.find.assert_called_once_with("type:Schema")
         
-    @patch('mcp_cordra.server.cordra_client')
-    async def test_list_schemas_empty(self, mock_client):
-        """Test schema listing with no results."""
-        mock_client.find = AsyncMock(return_value=[])
-        
-        from mcp_cordra.server import list_cordra_schemas
-        result = await list_cordra_schemas()
-        
-        parsed_result = json.loads(result)
-        assert parsed_result["schemas"] == []
-        assert parsed_result["count"] == 0
-        
-        mock_client.find.assert_called_once_with("type:Schema")
+        # Verify add_resource was called for each schema
+        assert mock_mcp.add_resource.call_count == 3
 
     @patch('mcp_cordra.server.cordra_client')
-    async def test_list_schemas_missing_name_field(self, mock_client):
-        """Test schema listing with objects missing name field."""
+    async def test_register_schema_resources_missing_name(self, mock_client):
+        """Test schema resource registration with objects missing name field."""
         mock_schemas = [
-            {"content": {"name": "User"}, "identifier": "test/user-schema"},
-            {"content": {}, "identifier": "test/no-name-schema"},  # Missing name field
-            {"content": {"name": "Project"}, "identifier": "test/project-schema"},
-            {"content": {"other": "field"}}  # No name or identifier
+            {"content": {"name": "User"}, "id": "test/user-schema"},
+            {"content": {}, "id": "test/no-name-schema"},  # Missing name field
+            {"content": {"name": "Project"}, "id": "test/project-schema"}
         ]
         mock_client.find = AsyncMock(return_value=mock_schemas)
 
-        from mcp_cordra.server import list_cordra_schemas
-        result = await list_cordra_schemas()
+        with patch('mcp_cordra.server.mcp') as mock_mcp:
+            from mcp_cordra.server import register_schema_resources
+            await register_schema_resources()
 
-        parsed_result = json.loads(result)
-        assert parsed_result["count"] == 2  # Only objects with name field
-        assert "User" in parsed_result["schemas"]
-        assert "Project" in parsed_result["schemas"]
-        assert len(parsed_result["schemas"]) == 2
+        # Only 2 schemas should be registered (those with name field)
+        assert mock_mcp.add_resource.call_count == 2
 
     @patch('mcp_cordra.server.cordra_client')
-    async def test_list_schemas_client_error(self, mock_client):
-        """Test schema listing with client error."""
-        from mcp_cordra.client import CordraClientError
+    async def test_register_schema_resources_client_error(self, mock_client):
+        """Test schema resource registration with client error."""
         mock_client.find = AsyncMock(side_effect=CordraClientError("Search failed"))
 
-        from mcp_cordra.server import list_cordra_schemas
-        with pytest.raises(RuntimeError) as exc_info:
-            await list_cordra_schemas()
+        # Should not raise an exception, just log a warning
+        from mcp_cordra.server import register_schema_resources
+        await register_schema_resources()  # Should complete without raising
 
-        assert "Failed to list schemas" in str(exc_info.value)
-        assert "Search failed" in str(exc_info.value)
-
-    @patch('mcp_cordra.server.cordra_client')
-    async def test_list_schemas_json_format(self, mock_client):
-        """Test that the returned JSON is properly formatted."""
-        mock_schemas = [
-            {"content": {"name": "TestSchema"}, "identifier": "test/schema"}
-        ]
-        mock_client.find = AsyncMock(return_value=mock_schemas)
-        
-        from mcp_cordra.server import list_cordra_schemas
-        result = await list_cordra_schemas()
-        
-        # Verify it's valid JSON with proper indentation
-        parsed_result = json.loads(result)
-        assert isinstance(parsed_result, dict)
-        
-        # Check that the result contains indentation (pretty-printed)
-        assert "  " in result  # Should have 2-space indentation
-        
-        # Verify expected structure
-        assert "schemas" in parsed_result
-        assert "count" in parsed_result
-        assert isinstance(parsed_result["schemas"], list)
-        assert isinstance(parsed_result["count"], int)
+        mock_client.find.assert_called_once_with("type:Schema")