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wham now uses automask

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Daniel Bauer
2019-08-16 14:23:47 +02:00
parent 3f5100b779
commit 37e900dd91
1 changed files with 3 additions and 2 deletions
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5
adaptiveumbrella/wham2d.py
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@@ -74,7 +74,7 @@ class WHAM2DRunner(UmbrellaRunner):
borders = self.get_wham_borders() borders = self.get_wham_borders()
cmd = "{exec} Px={px} {min_x} {max_x} {frames_x} Py={py} {min_y} {max_y} {frames_y} {tol} {temperature} 0 {metafile} {outfile} 0".format( cmd = "{exec} Px={px} {min_x} {max_x} {frames_x} Py={py} {min_y} {max_y} {frames_y} {tol} {temperature} 0 {metafile} {outfile} {mask}".format(
exec=self.WHAM_EXEC, exec=self.WHAM_EXEC,
px=self.whamconfig['Px'], px=self.whamconfig['Px'],
min_x=borders[0], min_x=borders[0],
@@ -87,7 +87,8 @@ class WHAM2DRunner(UmbrellaRunner):
tol=self.whamconfig['tolerance'], tol=self.whamconfig['tolerance'],
temperature=self.whamconfig['temperature'], temperature=self.whamconfig['temperature'],
metafile=metafile_path, metafile=metafile_path,
outfile=output_path outfile=output_path,
mask=1
) )
if self.verbose: if self.verbose:
print(cmd) print(cmd)