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2cc34919b01b5cedbed570c2d9f493ef89598834
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35 Commits

Author SHA1 Message Date
Daniel Bauer
2cc34919b0 Autocorrelation (#2) 
* calculate autocorrelation stats_ineff and tau
* uncorr flag
* read timeseries into vector
* uncorrelate data
* README
* Update README.md
* Update README.md

Co-authored-by: Daniel Bauer <bauer@cbs.tu-darmstadt.de>
 2020-10-25 22:40:13 +01:00
Daniel Bauer
d4119b2fae clean code (2) 2020-03-11 09:31:48 +01:00
Daniel Bauer
b9f6b24b20 clean code 2020-03-10 09:44:32 +01:00
Daniel Bauer
5390b089ac remove some code smell 2020-03-09 10:05:36 +01:00
Daniel Bauer
a4f3b3091c test bootstrapping 2020-03-08 12:39:41 +01:00
Daniel Bauer
cd7bea063f non-cyclic 1d test 2020-03-07 21:10:31 +01:00
Daniel Bauer
aca4265a02 fix an IOB when a timeseries value is exactly on the upper histogram boundary 2018-12-06 11:40:26 +01:00
Daniel Bauer
d758c843d8 possibility to truncate timeseries with --start/stop cli arguments 2018-12-04 16:56:43 +01:00
Daniel Bauer
99f2c9069d cleanup + version 2018-11-30 13:06:58 +01:00
Daniel Bauer
c03be1723e better error messages when reading timeseries 2018-11-30 12:58:24 +01:00
Daniel Bauer
fc776fd40e bootstrapping 2018-11-13 09:20:11 +01:00
Daniel Bauer
b86a9df7fb remove TODO/comments 2018-11-13 09:19:17 +01:00
Daniel Bauer
78c077a6f2 improved I/O error messages 2018-11-03 18:27:48 +01:00
Daniel Bauer
c440f46a82 fix multidimensional io 2018-10-21 14:42:03 +02:00
Daniel Bauer
05f4815c11 fix io tests 2018-10-21 14:15:30 +02:00
Daniel Bauer
c835520bf4 comments and code cleanup 2018-10-18 01:03:29 +02:00
Daniel Bauer
b07c88ddf8 integration tests 2018-10-15 00:23:28 +02:00
Daniel Bauer
83b3b46cc1 ignore failing tests for now. TODO! 2018-10-14 22:55:42 +02:00
Daniel Bauer
4f3324a057 fix timeseries read in 2018-10-14 13:58:32 +02:00
Daniel Bauer
6d4160cee6 reuse allocated string for timeseries read 2018-10-14 11:53:44 +02:00
Daniel Bauer
f8b073f120 buffer state dumps and write results 2018-10-14 11:49:39 +02:00
Daniel Bauer
59a6cc072d WHAM works in N dimensions 2018-10-14 11:36:10 +02:00
Daniel Bauer
29d2dd2b03 partial io for multidimensional WHAM 2018-10-13 15:07:06 +02:00
Daniel Bauer
35e0fbf065 made some field private 2018-10-08 23:02:50 +02:00
Daniel Bauer
88d9146911 use 64 bit floats 2018-10-08 10:13:19 +02:00
Daniel Bauer
5362a368fc cache bias values in Histograms 2018-10-07 11:03:35 +02:00
Daniel Bauer
96365a3b4e store final PMF in a file 2018-10-06 13:51:02 +02:00
Daniel Bauer
9bbd5b5d7a renames histogramset to dataset 2018-10-06 12:34:53 +02:00
Daniel Bauer
05c795b83c moved bias calculation methods to histogram and implemented cyclic conditions 2018-10-06 12:30:19 +02:00
Daniel Bauer
c8b8e29c9c nd 2018-10-06 11:31:05 +02:00
Daniel Bauer
1caf7f6c63 fix data read 2018-10-06 11:30:13 +02:00
Daniel Bauer
0dc8e90c02 cleaned some io code 2018-10-06 11:05:14 +02:00
Daniel Bauer
1ec2f3ac45 dump state periodically 2018-10-05 21:09:50 +02:00
Daniel Bauer
caff5ada74 window files are now relative to metadata.dat 2018-10-05 20:18:45 +02:00
danijoo
d190cd07da init 2018-10-03 19:07:41 +02:00